Accession: AT2G31960.2 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT2G31960.2 (Len=1950)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G31960.2, Len=1950):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQRKGPDPPPPQRRILRTQTAGNLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSG 80  
WD40-rpts                                                                                      

Query       81 RGVRQFKTALLQRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALQNAADKADRAQLTKAYQTAAVLFEVLKAVNQT 160 
WD40-rpts                                                                                      

Query      161 EDVEVADEILEAHTKVEEKSQIYVPYNILPLDPDSQNQAIMRFPEIQATVSALRNTRGLPWPAGHKKKLDEDMLDWLQTM 240 
WD40-rpts                                                                                      

Query      241 FGFQKDNVSNQREHLILLLANVHIRQFPRPEQQPRLDDRALTIVMKKLFKNYKKWCKYLGRKSSLWLPTIQQEVQQRKLL 320 
WD40-rpts                                                                                      

Query      321 YMGLYLLIWGEAANLRFLPECLCYIYHHMAFELYGMLAGSVSPMTGEHVKPAYGGEDEAFLQKVVTPIYKTIAKEAKRSR 400 
WD40-rpts                                                                                      

Query      401 GGKSKHSEWRNYDDLNEYFWSIRCFRLGWPMRADADFFCQTAEELRLDRSENKPKTGDRWMGKVNFVEIRSFWHIFRSFD 480 
WD40-rpts                                                                                      

Query      481 RMWSFYILSLQAMIIIAWNGSGKLSGIFQGDVFLKVLSIFITAAILKLAQAVLDIALSWKSRHSMSFHVKLRFIFKAVAA 560 
WD40-rpts                                                                                      

Query      561 AIWVVLMPLTYAYSWKTPSGFAETIKNWFGGHQNSSPSFFIIVILIYLSPNMLSTLLFAFPFIRRYLERSDYKIVMLMMW 640 
WD40-rpts                                                                                      

Query      641 WSQPRLYIGRGMHESALSLFKYTMFWVVLLISKLAFSFYAEIKPLVKPTKDIMRVHISVYRWHEFFPHAKSNMGVVIALW 720 
WD40-rpts                                                                                      

Query      721 SPVILVYFMDTQIWYAIVSTLVGGLNGAFRRLGEIRTLGMLRSRFQSLPEAFNACLVPNEKSETPKKKGIMATFTRKFDQ 800 
WD40-rpts                                                                                      

Query      801 VPSSKDKEAARFAQMWNKIISSFREEDLISDREMELLLVPYWADRDLDLIRWPPFLLASKIPIALDMAKDSNGKDRELTK 880 
WD40-rpts                                                                                      

Query      881 RLSVDSYMTCAVRECYASFKNLINFLVVGEREGQVINEIFSRIDEHIEKETLIKDLNLSALPDLYGQFVRLIEYLMENRE 960 
WD40-rpts                                                                                      

Query      961 EDKDQIVIVLLNMLEVVTRDIMDEEVPSMLESTHNGTYVKYDVMTPLHQQRKYFSQLRFPVYSQTEAWKEKIKRLHLLLT 1040
WD40-rpts                                                                                      

Query     1041 VKESAMDVPSNLEARRRLTFFSNSLFMEMPDAPKIRNMLSFSVLTPYYSEDVLFSIFGLEKQNEDGVSILFYLQKIFPDE 1120
WD40-rpts                                                                                      

Query     1121 WTNFLERVKCGSEEELRAREELEEELRLWASYRGQTLTKTVRGMMYYRKALELQAFLDMAKDEELMKGYKALELTSEDAS 1200
WD40-rpts                                                                                      

Query     1201 KSGTSLWAQCQALADMKFTFVVSCQQYSVQKRSGDQRAKDILRLMTTYPSLRVAYIDEVEQTHKESYKGADEKIYYSALV 1280
WD40-rpts                                                                                      

Query     1281 KAAPQTKSMDSSESVQTLDQVIYRIKLPGPAILGEGKPENQNHSIIFTRGEGLQTIDMNQDNYMEEAFKMRNLLQEFLVK 1360
WD40-rpts                                                                                      

Query     1361 HGGVRTPTILGLREHIFTGSVSSLAWFMSNQENSFVTIGQRVLASPLKVRFHYGHPDVFDRLFHLTRGGVCKASKVINLS 1440
WD40-rpts                                                                                      

Query     1441 EDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDLYRLGHRFDFFRMLSCYFTTIGFYFS 1520
WD40-rpts                                                                                      

Query     1521 TMLTVLTVYVFLYGRLYLVLSGLEEGLSNQKAFRSNMPLQAALASQSFVQIGFLMALPMMMEIGLERGFHNALIDFVLMQ 1600
WD40-rpts                                                                                      

Query     1601 LQLASVFFTFQLGTKTHYYGRTLFHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKGIELMILLLVYQIFGHAYRGVV 1680
WD40-rpts                                      (_______________________________________________

Query     1681 TYILITVSIWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKWIYNRGGIGVPPEKSWESWWEKEIGHLRHSGKRGIILE 1760
WD40-rpts      _WD 1________________________________________________)                          

Query     1761 IVLALRFFIFQYGLVYQLSTFKQENQSLWIYGASWFVILFILLIVKGLGVGRQRFSTNFQLLFRIIKGFVFLTFLGLLIT 1840
WD40-rpts                                                                                      

Query     1841 FLALRFLTPKDIFLCMLAFMPTGWGMLLIAQACKPLIQRLGFWSSVRTLARGYEILMGLLLFTPVAFLAWFPFVSEFQTR 1920
WD40-rpts                                                                                      

Query     1921 MLFNQAFSRGLQISRILGGQRKDRSSKNKE 1950
WD40-rpts

1 WD40-repeats found in QUERY=AT2G31960.2 (Len=1950):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 18  1633-1734     3.62  264.07  0.01707       27.5%      7.09

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1633-1734   TGRGFVVFHAKFAENYRFYSRSHFVKGIELMILLLVYQIFGHAYRGVVTYILITVSIWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKWIYNRGGIGVPP

   WD40 Template    TGECLRTLSG------------H-----------------TSGVTSV----------------------SFSPDGKRLVSGSED-----------GTIKVWD