Input parameters:

  Query = AT2G31955.2 (Len=390)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G31955.2, Len=390):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRRCFSKITDCHLGFKNSNFLLVGSEVGSGSVTRTITTTTSERLFSSSYAAHQVDQIKDNPVSDMLIDKFGRLHTYLRIS 80  
WD40-rpts                                                                                      

Query       81 LTERCNLRCQYCMPSEGVELTPKPQLLSQSEIVRLAGLFVSAGVNKIRLTGGEPTVRKDIEEICLQLSSLKGLKNLAITT 160 
WD40-rpts                                               (__________________________________WD 1

Query      161 NGITLAKKLPRLKECGLDSLNISLDTLVPAKFEFLTRRKGHDRVMKSIDTAIELGYNPVKVNCVIMRGLNDDEICDFVEL 240 
WD40-rpts      _________________________________)                                              

Query      241 TRDKPINVRFIEFMPFDGNVWNVKKLVPYAEVMDKVVKRFPSIKRMQDHPTETAKNFTIDGHCGSVSFITSMTEHFCAGC 320 
WD40-rpts                                                                                      

Query      321 NRLRLLADGNFKVCLFGPSEVSLRDPLRSGADDEALREIIGAAVKRKKAAHAGMLDIAKTANRPMIHIGG 390 
WD40-rpts                                                                            

1 WD40-repeats found in QUERY=AT2G31955.2 (Len=390):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   122-194      3.09  242.17  0.03342       20.0%     23.16

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  122-194    AGVNKIRLTGGEPTVRKDIEEICLQLSSLKGLKNLAITTNGITLAKKLPRLKECGLDSLNISLDTLVPAKFEF

   WD40 Template    TGECLRTLSGHTSGVTSV-----------------SFSPD--------------GKRLVSGSEDGTI--KVWD