Input parameters:

  Query = AT2G31830.2 (Len=1173)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G31830.2, Len=1173):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSVIIEPDEREALASLVPAHPLPPRKTHSYVEQCEQKPHHPIRKYSLDEGSRSVTSDSEAVYFDSSDGEFSTEGVAIVD 80  
WD40-rpts                                                                                      

Query       81 GRTSGERGNGEECGFVTPPSKPASQGGGNDGGREDDIESLPEFIGAGGGLDVFKVPVRAAVNPGRPPCLELRPHPLRETQ 160 
WD40-rpts                                                                                      

Query      161 TGKFLRNIACTESQLWAGQENGVRFWNLEEAYEVGCGLGGQVRRGDEDTAPFHESVPTSPALCLLVDHGNRLVWTGHKDG 240 
WD40-rpts                                                                                      

Query      241 KIRAWKMNQPNTTTADDSKPFKERLSWQAHRGPVNYIVISSYGDMWSCSDGGVIKIWTLDSLEKSLVLKLEEKHMAALLV 320 
WD40-rpts                                                                                      

Query      321 ERSGIDLRSQVTVNGTCSISSSDVKFLLVDTVKAKVWAVQHLSFSLWDAQNKELLKVFNIDGQVENRVDMPPTQGQQVED 400 
WD40-rpts                                                                                      

Query      401 TKAKFFSAPKKEKSQGFLQRSRHAIMGAAGAVRRAATRSAGAFAEDTRKVEAIAIAADGSIWTGSMNGVIAQWDGNGSRL 480 
WD40-rpts                                                                               (______

Query      481 REVNHHQQAVLCFCTFGDRIYVGYSSGYIQVLDLGGKLIASWVSHNEPVIKLAAGGGFIFSLATHGGVRGWYVTSPGPLD 560 
WD40-rpts      ___________WD 1_________________)                                               

Query      561 SLIRTELSQKEMAYARQDSVKILIGTWNVGEGRASRGALVSWLGSAVSDVGIVAIGLQEVDMGAGFLAMSTAKETVGVEG 640 
WD40-rpts                                                                                      

Query      641 SAVGQWWLDAIGNALDERNTFERMGSRQLAGLLISLWVRKSIRTHVGDLDVAAVPCGFGRAIGNKGGVGLRIRVYDRIMC 720 
WD40-rpts                                                                                      

Query      721 FVNCHLAAHLEAVTRRNADFNHIYRSMVFSKGQSVYTAAAAGASTSAQALKNNPNTNNSTEEEKSHLASADLVAFFGDFN 800 
WD40-rpts                                                                                      

Query      801 YRLFGITYDEARDFISHRSFDWLREKDQLRQEMNEGKVFQGMREALITFPPTYKFEKNKPGLGGYDSGEKKRIPAWCDRV 880 
WD40-rpts                                                                                      

Query      881 IYRDNQSISYTECSLKCPVVSSTIMYEACMDVTESDHKPVRCKLHANIAHTDKSVRRQELGKIVKSNEKLRAMFEELKSV 960 
WD40-rpts                                                                                      

Query      961 PETSVSTNNILLHSQDTFIFTIRNTSNSSRAIFNIVCKGQTLVREDGEEPDNHSRGTFGLPRWLEVSPGAGIIKPDASLQ 1040
WD40-rpts                                                                                      

Query     1041 VKVHHEDSHNSEEFIDGIQQNSLSEESSDKEVTLIIIVQGSCSTRTISHSIKVRHCSSAAKSLSLVHSKTTTMTKNLEGS 1120
WD40-rpts                                                                                      

Query     1121 TRYQTDANRDRRSSRTVKPSKEMHPVIVSSFSFLNSSDIRKGQIALRLFFRVQ 1173
WD40-rpts                                                           

1 WD40-repeats found in QUERY=AT2G31830.2 (Len=1173):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   474-513      3.41  255.72  0.02206       25.0%     35.21

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  474-513    DGNGSRLREVNHHQQAVLCFCTFGDRIYVGYSSGYIQVLD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD