Input parameters:

  Query = AT2G26490.1 (Len=465)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G26490.1, Len=465):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFTEADSIPRAKYANMMHSDPNLSSTMTQQTEEEYGIRNSSASAVGTGMYDRMSCEGSPMMMSPWNQATPFTQTQWSTVE 80  
WD40-rpts                                         (________________WD 1________________)       

Query       81 ENLPQNGLIGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNLKEFSAFKCNSGLVKAIVISGEKIFTGHQDGKIRVWK 160 
WD40-rpts           (________________WD 2_______________)(________________WD 3________________)

Query      161 VSPKNQSLHKRSGTLPTLKDIFKASLKPRNYVEVKKHRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKC 240 
WD40-rpts                                           (________________WD 4_______________)   (__

Query      241 LESIPAHDDAVNSVVSTTEAIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLVN 320 
WD40-rpts      ______________WD 5________________)          (________________WD 6______________

Query      321 FWEREKQLNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKRDGNIHTCLSVLTGHTGPVKCLAVEADREASERRDK 400 
WD40-rpts      __)(__________________WD 7_________________)     (_____________________WD 8_____

Query      401 KWIVYSGSLDKSVKVWGVSESFIDMNQMSMMQQQQQQHVISHSEPFMSDGSFSSSAGGASSHRRH 465 
WD40-rpts      ________________)          (________________WD 9________________)

9 WD40-repeats found in QUERY=AT2G26490.1 (Len=465):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    36-73       6.27  373.60  0.00057        5.0%      9.94
  WD 2:  Seg  2    86-122      6.75  393.60  0.00031       22.5%     51.11
  WD 3:  Seg  6   123-160      8.53  467.17  3.1e-05       22.5%     51.96
  WD 4:  Seg 13   198-234      8.24  454.86  4.6e-05       30.0%     53.91
  WD 5:  Seg 17   238-275      8.49  465.40  3.3e-05       35.0%     51.30
  WD 6:  Seg 21   286-323      9.38  502.18  1.1e-05       32.5%     45.55
  WD 7:  Seg 24   324-364      6.71  391.89  0.00033       35.0%     39.96
  WD 8:  Seg 28   370-417      7.86  439.15  7.5e-05       37.5%     51.61
  WD 9:  Seg 31   428-465      4.45  298.66  0.00587       12.5%     37.41

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   36-73     --GIRN---SSASAVGTGMYDRMSCEGSP---------MMMSPWNQATPFTQ
   WD 2   86-122    -NGLIG---SLVREEGHIYSLAATKD--L---------LYTGSDSKNIRVWK
   WD 3  123-160    NLKEFS---AFKCNSGLVKAIVIS--GEK---------IFTGHQDGKIRVWK
   WD 4  198-234    R---TA---LWIKHADAVSCLSLNDEQGL---------LYSASWDRTIKVWR
   WD 5  238-275    -SKCLE---SIPAHDDAVNSVVSTTEA-I---------VFSGSADGTVKAWK
   WD 6  286-323    T--LMQ---TLTKQESAVTALAVSKNGAA---------VYFGSSDGLVNFWE
   WD 7  324-364    REKQLNYGGILKGHKLAV--LCLEVAGSL---------VFSGSADKTICVWK
   WD 8  370-417    -HTCLS---VLTGHTGPVKCLAVEADREASERRDKKWIVYSGSLDKSVKVWG
   WD 9  428-465    -MSMMQ---QQQQQHVISHSEPFMSDGSF---------SSSAGGASSHRRH-

   WD40 Template    TGECLR---TLSGHTSGVTSVSFSPDGKR---------LVSGSEDGTIKVWD