Input parameters:

  Query = AT2G25870.1 (Len=584)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G25870.1, Len=584):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSRVCPTLRYNRIWSAHAREMPRATLLLLQPNFFHSSPKTALVNRLDVTSSEFSSMFRRSFHALRSTVGDWRKLPKPPG 80  
WD40-rpts                                                                                      

Query       81 QVFAERREYRKIRRRAPKKKQELELSVSICIEEQLPDDLEIQNIAEMLRLNVPMAMTLAFNGLKDSKYKTRETDIEDLGG 160 
WD40-rpts                                                                                      

Query      161 YETVELSVMLCNDDFICKLNKEWRGEDHATDVLSMSQHVPELKLPVLMMGDLVISVETAARQAAERGHTLLDEIRILVIH 240 
WD40-rpts                             (___________________________________________WD 1_________

Query      241 GLLHLLGFDHEISDEAEQEMEEEEELLLKNLGWKGKGLIQSAYDIQKTTTVQPEKSDDRKEGDGLRLYKPKFSYIFCDMD 320 
WD40-rpts      _________________________________)                                              

Query      321 GTLLNSKSQISEANAKALKEALLRGLKVVIATGKSRPGAIRILKTADLTGSDGIISESSPGVFVQGLLVYGRQGKEVYRG 400 
WD40-rpts                                                                                      

Query      401 NLDRDVCRETCLYSLEHRIPLIAFSQDRCLTLFDHPLVDSLHTIYNEPKAEIISSVDQLIAEADIQKVIFMDTTEGVSSV 480 
WD40-rpts                                                                                      

Query      481 IRPYWSEATGDRANVVQAQSDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNGAEKTK 560 
WD40-rpts                                                                                      

Query      561 AVADVIGVSNDQDGVADAIYRYAF 584 
WD40-rpts                              

1 WD40-repeats found in QUERY=AT2G25870.1 (Len=584):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   184-274      2.77  229.07  0.04976       27.5%     -2.89

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  184-274    RGEDHATDVLSMSQHVPELKLPVLMMGDLVISVETAARQAAERGHTLLDEIRILVIHGLLHLLGFDHEISDEAEQEMEEEEELLLKNLGWK

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD---GKRLVS-----------GSE-------------------DGTIK------------------VWD