Input parameters:

  Query = AT2G23580.1 (Len=263)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G23580.1, Len=263):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKNNKKRFVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQTLKDYCKPLLELLNSLGSDDDKVIL 80  
WD40-rpts                                     (_________________________________WD 1___________

Query       81 VAHSMGGIPAALASDIFPSKIATIVFLTAFMPDTRNLPAYVYQKLIRSVPQEGWLDTVFGTYGKHECPLEFALFGPKFMA 160 
WD40-rpts      ______________________)                                                         

Query      161 KNLYQLSPVQDLELAKMLVRVNPIITNNLAGTRSFSEEGYGTVTRIYIVCGEDMAVPEDYQWWMIKNFPPKEVMEIKCAD 240 
WD40-rpts                                                                                      

Query      241 HMAMFSKPHKLCALLVEIACKYA 263 
WD40-rpts                             

1 WD40-repeats found in QUERY=AT2G23580.1 (Len=263):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    32-103      2.97  237.36  0.03869       22.5%     19.22

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   32-103    VGHCVTAVDLAASGINMTRLEEIQTLKDYCKPLLELLNSLGSDDDKVILVAHSMGGIPAALASDIFPSKIAT

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK----------------------RLVSGSEDG----------TIKVWD