Input parameters:

  Query = AT2G22910.1 (Len=609)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G22910.1, Len=609):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTERGAMVVSSSTCYVPFRCPQARKDFAFVEPSKKLNPNRVLIKPPVYTYSPALTAAKCNIFDYAETGENLVGDKQFVRW 80  
WD40-rpts                                                                                      

Query       81 FREAWPYLWAHRSCTFVVTISGDVLDGPYCDLVLKDIAFLHHLGIKFVLVPGTQVQIDQLLAERGREPTYVGRYRVTDSA 160 
WD40-rpts                                                                                      

Query      161 SLQAAKEAAGAISVMIEAKLSPGPSIYNIRRHGDSSRLHETGVRVDTGNFFAAKRRGVVDGVDFGATGLVKKIDVDRIRE 240 
WD40-rpts                                                             (________________________

Query      241 RLDSGSVVLLRNLGHSSTGEVLNCNTYEVATACALAIGADKLICIMDGPVLDENGHLVRFLTLQEADTLVRKRAQQSEIA 320 
WD40-rpts      _________WD 1_________________________________)                                 

Query      321 ANYVKAVGDGGISSFPEPLGYNGMVTTPNNHIGRPIWEKLSPTFQNGVGFDNGNGLWSGEQGFAIGGEERISRLNGYLSE 400 
WD40-rpts                                                                                      

Query      401 LAAAAFVCRGGVKRVHLLDGTISGVLLLELFKRDGMGTMVASDVYEGNREAKVEDLAGIRQIIKPLEESGALVRRTDEEL 480 
WD40-rpts                                                                                      

Query      481 LRALDSFVVVEREGHIIACAALFPFFEEKCGEVAAIAVASDCRGQGQGDKLLDYIEKKASALGLEMLFLLTTRTADWFVR 560 
WD40-rpts                                                                                      

Query      561 RGFQECPIEMIPEARRERINLSRRSKYYMKKLLPDRSGISVVRTFQYDS 609 
WD40-rpts                                                       

1 WD40-repeats found in QUERY=AT2G22910.1 (Len=609):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   216-287      3.09  242.50  0.03308       25.0%     13.84

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  216-287    RGVVDGVDFGATGLVKKIDVDRIRERLDSGSVVLLRNLGHSSTGEVLNCNTYEVATACALAIGADKLICIMD

   WD40 Template    TGECLRTLSGHTSGVTSVS--------------------FSPDGKRLVSG------------SEDGTIKVWD