Input parameters:

  Query = AT2G21870.1 (Len=240)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G21870.1, Len=240):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAV 80  
WD40-rpts                              (_______________________________________________________

Query       81 KQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLR 160 
WD40-rpts      ________________________________________________WD 1____________________________

Query      161 SDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240 
WD40-rpts      __________________________________________________________________________)     

1 WD40-repeats found in QUERY=AT2G21870.1 (Len=240):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    25-235      3.05  240.48  0.03519       27.5%     -7.41

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-235    HAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLD

   WD40 Template    GEC-------------LR----------------------------TLSGHT-----------------SGVTSV------------SFSPD--------------------------------------GKRLVSGS----------------------ED------------------------------------------GTIKVWD