Input parameters:

  Query = AT2G20900.4 (Len=509)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G20900.4, Len=509):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKYNSLSDFLKEFYIPTYVLSAETEEEEEEESRPTPASPVLVFINSKSGGQLGGELILTYRSLLNHNQVFDLDQETPDK 80  
WD40-rpts                                                                       (______________

Query       81 VLRRIYLNLERLKDDDFARQIREKLKIIVAGGDGTAGWLLGVVCDLKLSHPPPIATVPLGTGNNLPFAFGWGKKNPGTDR 160 
WD40-rpts      ________________WD 1_____________________________)                              

Query      161 TAVESFLEQVLKAKVMKIDNWHILMRMKTPKEGGSCDPVAPLELPHSLHAFHRVSPTDELNKEGCHTFRGGFWNYFSLGM 240 
WD40-rpts                                                                                      

Query      241 DAQISYAFHSERKLHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQLAKVKIATRNGQWQDLHIPHSIRSIVC 320 
WD40-rpts                                                                                      

Query      321 LNLPSFSGGLNPWGTPNPRKQRDRGLTPPFVDDGLIEVVGFRNAWHGLVLLAPNGHGTRLAQANRIRFEFHKGATDHTFM 400 
WD40-rpts                                                                                      

Query      401 RMDGEPWKQPLPLDDETVMVEISHLGQVNMLATHDCRSRSVFDPSTPRHQDGAEDYDDNEDDSVAEGEEFRKFGAADTFK 480 
WD40-rpts                                                                                      

Query      481 IPDEGEHSNKKGRASRRRNSNVHGWSHVL 509 
WD40-rpts                                   

1 WD40-repeats found in QUERY=AT2G20900.4 (Len=509):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    66-130      3.26  249.46  0.02674       17.5%     25.73

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   66-130    NHNQVFDLDQETPDKVLRRIYLNLERLKDDDFARQIREKLKIIVAGGDGTAGWLLGVVCDLKLSH

   WD40 Template    TGECLRTLSGHTSGVTSVSF------SPD---------GKRLVSGSEDGT----------IKVWD