Input parameters:

  Query = AT2G20690.1 (Len=271)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G20690.1, Len=271):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMAARTHCINLIPKVCLPQSFRTGESVTNLRFDCVSKSSKLSLKTSCGRSRTHHRRQNLSIRSVFTGIVEEMGEVKDLGM 80  
WD40-rpts                                                                                      

Query       81 ADHGGFDLKIGARVVLEDVKLGDSIAVNGTCLTVTEFNAEEFTVGLAPETLRKTSLEELKKGSPVNLERALQPVSRMGGH 160 
WD40-rpts                                 (_______________________________WD 1_________________

Query      161 VVQGHVDGTGVIESMEVEGDSLWVKVKADKGLLKYIVPKGFVAVDGTSLTVVDVFDEESCFNFMMIAYTQQNVVIPTKKI 240 
WD40-rpts      _____________)                                                                  

Query      241 GQKVNLEVDIMGKYVERLLTSGGFSKGKENI 271 
WD40-rpts                                     

1 WD40-repeats found in QUERY=AT2G20690.1 (Len=271):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   108-174      3.42  256.00  0.02188       27.5%     42.12

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  108-174    NGTCLTVTEFNAEEFTVGLAPETLRKTSLEELKKGSPVNLERALQPVSRMGGHVVQGHVDGTGVIES

   WD40 Template    TGECLRTLSGHTSGVTSVSF---------------------------SPDGKRLVSGSEDGTIKVWD