Input parameters:

  Query = AT2G20630.1 (Len=279)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G20630.1, Len=279):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGREILHKMKVGLCGSDTGRGKTKVWKNIAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQ 80  
WD40-rpts                                                                                      

Query       81 TNLFDNILKEKDFWTDTKNAIRNAYISTDAVILEQSLKLGKGGSTAVTGILIDGKTLVIANVGDSRAVMSKNGVASQLSV 160 
WD40-rpts                                                                             (________

Query      161 DHEPSKEQKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSDPDIRDENIDHETEFILFASDGVWKVMSNQE 240 
WD40-rpts      ______________WD 1_____________________)                                        

Query      241 AVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIVVRFQ 279 
WD40-rpts                                             

1 WD40-repeats found in QUERY=AT2G20630.1 (Len=279):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   152-200      2.95  236.70  0.03947       20.0%      5.56

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  152-200    NGVASQLSVDHEPSKEQKEIESRGGFVSNIPGDVPRVDGQLAVARAFGD

   WD40 Template    TGECLRTLSGHTSGV---------TSVSFSPDGKRLVSGSEDGTIKVWD