Input parameters:

  Query = AT2G18900.1 (Len=804)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G18900.1, Len=804):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPASSPAQKILCYCWTASLDGTIR 80  
WD40-rpts       (______________WD 1_____________)   (____________________WD 2__________________

Query       81 HWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRRELSGKLVAYVSVEDISVVNQGSKELRGHIRRFNLAKSRIPRG 160 
WD40-rpts      __)   (____________________WD 3____________________)                   (________

Query      161 DTLKETAEPESIVISPSGEFFGIRHKCKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTGRVLIWR 240 
WD40-rpts      __________WD 4__________________)          (________________WD 5_______________)

Query      241 GFGNRKLALGNQKKKVRAMVDLDNAGVRGEDDAESCTTWHWHSAEVNVLNFSSDGAYLYSGGREGVLVVWQLDTGKKKFL 320 
WD40-rpts                                        (________________WD 6_______________)     (___

Query      321 PRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKMPSMEILRTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCV 400 
WD40-rpts      ____________WD 7_______________)   (______________________WD 8__________________

Query      401 QLYNLLNDRGISEIQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTFTLSTIVY 480 
WD40-rpts      ___)            (______________________WD 9_____________________)          (____

Query      481 EPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSSWICHAVGSYKKKPMTAAAFSGDGTVMAVAAENVI 560 
WD40-rpts      ____________WD10________________)(_______________________WD11___________________

Query      561 TLWNPDKNILLSVLGSTLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSWSYGLRIEAVTSAVDSSAFAVLAVI 640 
WD40-rpts      ___)   (__________________WD12_________________)                     (__________

Query      641 PKTFKTDESKENIFRGRDGAILLFNGSDPKPVSIWTVMKARGGSISFLEGDKSQLRLAYVNGSHEYVVFDPNSDESHERS 720 
WD40-rpts      ___________WD13____________________)     (__________________WD14________________

Query      721 AVDYDGLAGLEETGDAGYTSLYGQLPDYDKKRMEDVESLGTPFVSSERPWETIFSGSTLNFPPLQKLCAEFFESLMEKRT 800 
WD40-rpts      _)   (_________________WD15________________)                                    

Query      801 AVVE 804 
WD40-rpts          

15 WD40-repeats found in QUERY=AT2G18900.1 (Len=804):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     2-34       5.48  341.19  0.00157       22.5%     41.76
  WD 2:  Seg  4    38-83       7.60  428.69  0.00010       37.5%     54.29
  WD 3:  Seg  8    87-132      5.47  340.67  0.00160       27.5%     37.31
  WD 4:  Seg 13   152-193      5.72  351.06  0.00116       20.0%     39.31
  WD 5:  Seg 17   204-240      7.62  429.42  0.00010       17.5%     48.11
  WD 6:  Seg 23   275-311      8.35  459.59  4.0e-05       32.5%     53.72
  WD 7:  Seg 27   317-352      6.62  387.92  0.00037       17.5%     51.62
  WD 8:  Seg 30   356-404      6.43  380.24  0.00047       22.5%     56.59
  WD 9:  Seg 35   417-465      6.78  394.59  0.00030       22.5%     37.40
  WD10:  Seg 39   476-513      6.66  389.83  0.00035       25.0%     46.81
  WD11:  Seg 42   514-564      6.02  363.37  0.00079       22.5%     52.82
  WD12:  Seg 46   568-608      7.13  409.34  0.00019       22.5%     53.92
  WD13:  Seg 52   630-676      6.50  383.31  0.00042       15.0%     40.68
  WD14:  Seg 56   682-722      5.57  344.89  0.00140       17.5%     31.76
  WD15:  Seg 59   726-764      4.53  301.67  0.00534       10.0%     12.10

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    2-34     ------------------KRGG----------RSYVT--SPPSFSN---DAK-------KLLVCT---GN---------TVSVFS
   WD 2   38-83     -GL------------QITSLEG----------HTAPV--TTLIVVP---ASSPAQKILCYCWTASL--DG---------TIRHWD
   WD 3   87-132    -PE------------LLKTIDA------QLPIYSMVI--PSLLSEPQQIDKR-------RELSGKL--VA---------YVSVED
   WD 4  152-193    LAK---------SRIPRGDTLK----------ETAEP--ESIVISP---SGE-------FFGIRH---KC---------KIHIWD
   WD 5  204-240    SRK---------------MTLH----------HTKVI--NAFAFHP---TER-------VIAAGDV--TG---------RVLIWR
   WD 6  275-311    S---------------CTTWHW----------HSAEV--NVLNFSS---DGA-------YLYSGGR--EG---------VLVVWQ
   WD 7  317-352    ----------------KKFLPR----------IGSPL--LYFMWSP---DPT-------LSSVVCA--DN---------QIHLLK
   WD 8  356-404    -ME------------ILRTISGIKPPPSLPRMYEGLA--STVAFDR---SSG-------IAALCTE--NY---------CVQLYN
   WD 9  417-465    CER------------NHQPGDE----------ITVVV--TAVALSL---DGS-------VMSTTEV--KLPEDGIGGLVSLKFWA
   WD10  476-513    STI------------VYE--PH----------RDAGV--SAIVFHP---TRS-------MAVSTSF--GG---------DFKIWV
   WD11  514-564    CNSDKNQTDKDSSWICHAVGSY----------KKKPM--TAAAFSG---DGT-------VMAVAA---EN---------VITLWN
   WD12  568-608    -NI------------LLSVLGS----------TLTPI--TKLCFAG---KSE-------FLVAASHIPRP---------ELSVWN
   WD13  630-676    DSS-----AFAVLAVIPKTFKT----------DESKE--NIFRGRD---GAI-------LLFNGSD--PK---------PVSIWT
   WD14  682-722    -GG------------SISFLEG----------DKSQLRLAYVNGSH---EYV-------VFDPNSD--ES---------HERSAV
   WD15  726-764    -GL------------AGLEETG----------DAGYT--SLYGQLP---DYD-------KKRMEDV--ES---------LGTPFV

   WD40 Template    TGE------------CLRTLSG----------HTSGV--TSVSFSP---DGK-------RLVSGSE--DG---------TIKVWD