Input parameters:

  Query = AT2G07360.2 (Len=1198)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G07360.2, Len=1198):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAESSGTTLMDLISADPTPVPAQSTSSSASSTASQPTSASASSSSHLHHPMSTKTTLGEKKSKRATLMQIQNDTISVAKA 80  
WD40-rpts                                                                                      

Query       81 ALNPVKANIMPQRQRQKKKPVSYSQLARSIHELAATLDQKSSQKQLVNHVFPKLAVYNSVDPSLAPSLLMLNQQCEDRNV 160 
WD40-rpts                                                                                      

Query      161 LRYVYYYLARILSDTGMTPGGGIPTPNWDALADIDAGGGVTRADVVPRIVNQLTNEATNSEFEFHARRLQALKALTYSPS 240 
WD40-rpts                                                                                      

Query      241 GNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKESIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADP 320 
WD40-rpts                                                                                      

Query      321 VAVRHSLEILSELATRDPYTVAMTLEKLASPTGALQDILHMNDVLARVSLARLCHSISRARALDERPDIRSQFNSILYQL 400 
WD40-rpts                                                                                      

Query      401 LLDPSERVCYEAILCILGKHDNTERHEMDERAAGWYRLTREILKLPEAPSLSSKDKSNKTKRPQPLIKLVMRRLESSFRS 480 
WD40-rpts                                                                                      

Query      481 FSRPVLHAAARVVQEMGKSRAAAFAMGLQDIDESVHVNAFSDALDDAETNESSHPEGIRRTSSISAGPGRSDTIASLLAA 560 
WD40-rpts                                                                                      

Query      561 LMEVVRTTVACECVYVRAMVIKALIWMQSPDESLDELKSIIASELSDPGWPAALVNDVLLTLHARFKATPDMAVILLEIA 640 
WD40-rpts                                                                                      

Query      641 RIFATKVPGKIDADVLQLLWKTCLVGAGPDGKHTALEAVTIVLDLPPPQPGSMAGLTSIDRVSASDPKSALALQKLVQAA 720 
WD40-rpts                                                                                      

Query      721 VWFLGENANYAASEYAWESATPPGTALMMLDADKMVAAASSRNPTLAGALTRLQRCAFSGSWEVRIVAIQALTTIAIRSG 800 
WD40-rpts                                                                                   (__

Query      801 EPFRLQIYEFLYTLAEGGVQSQLSEMHLSNGEDQGASGTGLGVLITPMLKVLDEMYVGQDELIKDIRHHDNANKEWKDEE 880 
WD40-rpts      _____________________________________________WD 1_______________________________

Query      881 LKKLYENHERLLDFVSMFCFIPRAKYLPLGPISAKLIDTYRTKHNITASTGSTDPAVVATGISDLIYESTQPAPAASNSS 960 
WD40-rpts      ________________)                                                               

Query      961 GLDDDLVNAWAANLGDDGLLGNNAPAMSRVNEFIAGVGTDAPDVEEENVFSRPSVGYDDMWAKTLLETSELEEEDARSGS 1040
WD40-rpts                                                                                      

Query     1041 SSPDSAGSVESSISSHFGGMNYPSLFSSKPSSQATAKSGGSKYQSTYEGYGSPIREEPPPPYSYSEPQSRESFENPVAGS 1120
WD40-rpts                                                                                      

Query     1121 GSRSYESDDEEPRKSTGTRFGTALYDFTAGGDDELNLTAEEELEIEYEVDGWFYVKKKRPGRDGKMAGLVPVLYVNQS 1198
WD40-rpts                                                                                    

1 WD40-repeats found in QUERY=AT2G07360.2 (Len=1198):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   798-897      3.76  269.85  0.01429       22.5%      8.54

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  798-897    RSGEPFRLQIYEFLYTLAEGGVQSQLSEMHLSNGEDQGASGTGLGVLITPMLKVLDEMYVGQDELIKDIRHHDNANKEWKDEELKKLYENHERLLDFVSM

   WD40 Template    TGECLRTLS-----------GHTSGVTSVSFSPDGKRLVSGSEDGT-----------------------------IKVWD--------------------