Input parameters:

  Query = AT2G07360.1 (Len=1196)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G07360.1, Len=1196):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAESSGTTLMDLISADPTPVPAQSTSSSASSTASQPTSASASSSSHLHHPMSTKTTLGEKKSKRATLMQIQNDTISVAKA 80  
WD40-rpts                                                                                      

Query       81 ALNPVKANIMPQRQRQKKKPVSYSQLARSIHELAATLDQKSSQKQLVNHVFPKLAVYNSVDPSLAPSLLMLNQQCEDRNV 160 
WD40-rpts                                                                                      

Query      161 LRYVYYYLARILSDTGMTPGGGIPTPNWDALADIDAGGGVTRADVVPRIVNQLTNEATNSEFEFHARRLQALKALTYSPS 240 
WD40-rpts                                                                                      

Query      241 GNSELLSKLYEIVFGILEKVGDVPHKRKKGVFGTKGGDKESIMRSNLQYAAMSALRRLPLDPGNPLFLHRAAQGVFFADP 320 
WD40-rpts                                                                                      

Query      321 VAVRHSLEILSELATRDPYTVAMTLEKLASPTGALQDILHMNDVLARVSLARLCHSISRARALDERPDIRSQFNSILYQL 400 
WD40-rpts                                                                                      

Query      401 LLDPSERVCYEAILCILGKHDNTERMDERAAGWYRLTREILKLPEAPSLSSKDKSNKTKRPQPLIKLVMRRLESSFRSFS 480 
WD40-rpts                                                                                      

Query      481 RPVLHAAARVVQEMGKSRAAAFAMGLQDIDESVHVNAFSDALDDAETNESSHPEGIRRTSSISAGPGRSDTIASLLAALM 560 
WD40-rpts                                                                                      

Query      561 EVVRTTVACECVYVRAMVIKALIWMQSPDESLDELKSIIASELSDPGWPAALVNDVLLTLHARFKATPDMAVILLEIARI 640 
WD40-rpts                                                                                      

Query      641 FATKVPGKIDADVLQLLWKTCLVGAGPDGKHTALEAVTIVLDLPPPQPGSMAGLTSIDRVSASDPKSALALQKLVQAAVW 720 
WD40-rpts                                                                                      

Query      721 FLGENANYAASEYAWESATPPGTALMMLDADKMVAAASSRNPTLAGALTRLQRCAFSGSWEVRIVAIQALTTIAIRSGEP 800 
WD40-rpts                                                                                 (____

Query      801 FRLQIYEFLYTLAEGGVQSQLSEMHLSNGEDQGASGTGLGVLITPMLKVLDEMYVGQDELIKDIRHHDNANKEWKDEELK 880 
WD40-rpts      ___________________________________________WD 1_________________________________

Query      881 KLYENHERLLDFVSMFCFIPRAKYLPLGPISAKLIDTYRTKHNITASTGSTDPAVVATGISDLIYESTQPAPAASNSSGL 960 
WD40-rpts      ______________)                                                                 

Query      961 DDDLVNAWAANLGDDGLLGNNAPAMSRVNEFIAGVGTDAPDVEEENVFSRPSVGYDDMWAKTLLETSELEEEDARSGSSS 1040
WD40-rpts                                                                                      

Query     1041 PDSAGSVESSISSHFGGMNYPSLFSSKPSSQATAKSGGSKYQSTYEGYGSPIREEPPPPYSYSEPQSRESFENPVAGSGS 1120
WD40-rpts                                                                                      

Query     1121 RSYESDDEEPRKSTGTRFGTALYDFTAGGDDELNLTAEEELEIEYEVDGWFYVKKKRPGRDGKMAGLVPVLYVNQS 1196
WD40-rpts                                                                                  

1 WD40-repeats found in QUERY=AT2G07360.1 (Len=1196):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   796-895      3.75  269.50  0.01444       22.5%      8.54

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  796-895    RSGEPFRLQIYEFLYTLAEGGVQSQLSEMHLSNGEDQGASGTGLGVLITPMLKVLDEMYVGQDELIKDIRHHDNANKEWKDEELKKLYENHERLLDFVSM

   WD40 Template    TGECLRTLS-----------GHTSGVTSVSFSPDGKRLVSGSEDGT-----------------------------IKVWD--------------------