Input parameters:

  Query = AT1G80710.1 (Len=516)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G80710.1, Len=516):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATEYERKRLENIRRNDEMLAALNVRAKASSLLSAAKRSRDDSKSFKKKKPKPASTPTVIRMSLRTRGLNPDSAGLPDGF 80  
WD40-rpts                                                        (_________________WD 1________

Query       81 SDFRMGSQITHNQPSPQKQSPRLLAPIPFESAYEGYGSYTQLVDTLLGIESKSCRGKLVKGEIGVVKDENESPMVRTRSS 160 
WD40-rpts      ________)                                                    (____________WD 2__

Query      161 SRVSKVSVKKEEPEDDSFSDYVNKEFSIPVKPEKIEFDLDLLTLEPQNVARVVPGRIFVVQFLPCENVKMVAAGDKLGNV 240 
WD40-rpts      __________)                           (____________________WD 3_________________

Query      241 GFWNLDCGNEEDNDGIYLFTPHSAPVSSIVFQQNSLSRVISSSYDGLIRLMDVEKSVFDLVYSTDEAIFSLSQRPNDEQS 320 
WD40-rpts      ___)        (_________________WD 4_________________)  (_________________WD 5____

Query      321 LYFGQDYGVFNVWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKTLSTVNHSRAVHS 400 
WD40-rpts      _____________)   (_________________WD 6_________________)       (_______________

Query      401 AYFSPSGLSLATTSLDNYIGVLSGANFENTCMIYHNNTSRWISKFKAVWGWDDSYIYVGNLSKKIDVINPKLKRTVMELH 480 
WD40-rpts      __WD 7________________)   (___________________WD 8__________________)   (_______

Query      481 NPLQRAIPCRIHCHPYNVGTLAGSTAGGQVYVWTTK 516 
WD40-rpts      ___________WD 9__________________)  

9 WD40-repeats found in QUERY=AT1G80710.1 (Len=516):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    51-89       5.12  325.98  0.00252       15.0%     -10.42
  WD 2:  Seg  2   142-171      4.49  299.99  0.00563       10.0%      7.28
  WD 3:  Seg  5   199-244      6.09  366.21  0.00072       20.0%     41.37
  WD 4:  Seg  9   253-292      7.87  439.79  7.4e-05       27.5%     54.30
  WD 5:  Seg 13   295-334      7.56  426.80  0.00011       25.0%     55.49
  WD 6:  Seg 17   338-377      8.35  459.48  4.0e-05       27.5%     51.67
  WD 7:  Seg 21   385-423      8.54  467.35  3.1e-05       30.0%     50.83
  WD 8:  Seg 25   427-469      6.26  373.04  0.00058       12.5%     53.42
  WD 9:  Seg 29   473-514      6.46  381.71  0.00045       12.5%     52.56

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   51-89     -P----KPASTPTVIRMS----L---RTRGLNP--DS-AG-LPDGFSDFRMGSQI
   WD 2  142-171    --------------EIGV----V---KDENESP--MV-RT-RSSSRVSKVSVKKE
   WD 3  199-244    LDLLTLEPQNVARVVPGR----I---FVVQFLPCENV-KM-VAAGDKLGNVGFWN
   WD 4  253-292    -N----DGIYLFTPHSAP----V---SSIVFQQ--NSLSR-VISSSYDGLIRLMD
   WD 5  295-334    -K----SVFDLVYSTDEA----I---FSLSQRP-NDE-QS-LYFGQDYGVFNVWD
   WD 6  338-377    -G----KSVFHWELHERR----I---NSIDFNP--QN-PHVMATSSTDGTACLWD
   WD 7  385-423    -K----PKTLSTVNHSRA----V---HSAYFSP--SG-LS-LATTSLDNYIGVLS
   WD 8  427-469    -F----ENTCMIYHNNTSRWISK---FKAVWGW--DD-SY-IYVGNLSKKIDVIN
   WD 9  473-514    -K----RTVMELHNPLQR----AIPCRIHCHPY--NV-GT-LAGSTAGGQVYVWT

   WD40 Template    TG----ECLRTLSGHTSG----V---TSVSFSP--DG-KR-LVSGSEDGTIKVWD