Input parameters:

  Query = AT1G80490.1 (Len=1119)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G80490.1, Len=1119):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPTLRTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQALKHPRTPPSNSAVDYPSGDSDHVSKRTRPMGISDEVSLGVN 320 
WD40-rpts                                                                                      

Query      321 MLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDL 400 
WD40-rpts                             (_________________WD 1_________________)                (

Query      401 SKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTT 480 
WD40-rpts      ____________________WD 2___________________)      (__________________WD 3_______

Query      481 CGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSAD 560 
WD40-rpts      __________)   (__________________WD 4_________________)   (___________________WD

Query      561 GTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGL 640 
WD40-rpts       5__________________)   (_________________WD 6_________________)(_______________

Query      641 QASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVSIPGMNGDSRNMVDVK 720 
WD40-rpts      ____WD 7___________________)           (_________________________WD 8___________

Query      721 PVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASL 800 
WD40-rpts      ______________)          (_________________WD 9________________)                

Query      801 PPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 880 
WD40-rpts                      (______________WD10______________)   (_________________WD11_____

Query      881 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSD 960 
WD40-rpts      ____________)   (_________________WD12________________)             (___________

Query      961 TRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNP 1040
WD40-rpts      ____WD13_______________) (___________________WD14__________________)          (_

Query     1041 SAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1119
WD40-rpts      __________________WD15__________________)                                      

15 WD40-repeats found in QUERY=AT1G80490.1 (Len=1119):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   344-383      5.31  333.88  0.00197       22.5%     54.69
  WD 2:  Seg  9   400-444      7.12  408.58  0.00019       17.5%     49.72
  WD 3:  Seg 12   451-491      7.31  416.74  0.00015       35.0%     52.26
  WD 4:  Seg 16   495-535      7.40  420.25  0.00013       30.0%     57.93
  WD 5:  Seg 20   539-581      6.17  369.36  0.00065       22.5%     55.08
  WD 6:  Seg 24   585-624      7.58  427.88  0.00011       32.5%     57.70
  WD 7:  Seg 28   625-668      6.84  397.19  0.00028       20.0%     55.88
  WD 8:  Seg 33   680-735      3.35  252.88  0.02408       15.0%     26.53
  WD 9:  Seg 37   746-784      6.77  394.30  0.00030        7.5%     46.15
  WD10:  Seg 42   817-850      4.55  302.67  0.00518       12.5%     44.47
  WD11:  Seg 45   854-893      7.05  406.06  0.00021       22.5%     58.83
  WD12:  Seg 49   897-935      8.87  481.02  2.0e-05       32.5%     58.75
  WD13:  Seg 54   949-984      3.12  243.48  0.03211       12.5%     36.56
  WD14:  Seg 57   986-1028     6.91  400.02  0.00025       22.5%     58.99
  WD15:  Seg 62  1039-1081     5.26  332.04  0.00208       10.0%     46.26

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  344-383    -P---K----T-----VARTL---S-QGSSPMSM--D----------------FHP-IKQTLL--LVGTNV----GDIGLWE
   WD 2  400-444    LS---K----CSMPLQAALVK---E-PVVSVNRV--I----------------WSP-DGS-LF--GVAYSR----HIVQLYS
   WD 3  451-491    -M---R----Q-----HLEID---A-HVGGVNDI--A----------------FST-PNK-QLCVTTCGDD----KTIKVWD
   WD 4  495-535    -G---V----K-----RYTFE---G-HEAPVYSICPH----------------YKE-NIQ-FI--FSTALD----GKIKAWL
   WD 5  539-581    -M---G----S-----RVDYE---A-PGRWCTTM--A----------------YSA-DGT-RL--FSCGTSKDGESFIVEWN
   WD 6  585-624    -G---A----V-----KRTYQ---GFHKRSLGVV--Q----------------FDT-TKN-RY--LAAGDD----FSIKFWD
   WD 7  625-668    MD---TIQLLT-----AIDAD---G-GLQASPRI--R----------------FNK-EGS-LL--AVSAND----NMIKVMA
   WD 8  680-735    EN---L----S-----SESSK---P-AINSIPMV--ERPASVVSIPGMNGDSRNMV-DVK-PV--ITEESN----DKSKVWK
   WD 9  746-784    -R---S----L-----RLPEN---M-RVTKISRL--I----------------FTN-SGN-AI--LALASN----AIHLLWK
   WD10  817-850    -----------------VAET---N-PEEAVPCF--A----------------LSK-NDS-YV--MSASGG-----KISLFN
   WD11  854-893    -F---K----T-----MATFM---P-PPPAATFL--A----------------FHPQDNN-II--AIGMDD----STIQIYN
   WD12  897-935    -D---E----V-----KSKLK---G-HSKRITGL--A----------------FSN-VLN-VL--VSSGAD----AQLCVWN
   WD13  949-984    IP---Q------------GRS---T-SSLSDTRV--Q----------------FHQ-DQV-HF--LVVH-E----TQLAIYE
   WD14  986-1028   TKLECM----K-----QWPVR---E-SAAPITHA--T----------------FSC-DSQ-LI--YTSFMD----ATICVFS
   WD15 1039-1081   NP---S----A-----YLPASLSNS-NVHPLVIA--A----------------HPQ-ESN-MF--AVGLSD----GGVHIFE

   WD40 Template    TG---E----C-----LRTLS---G-HTSGVTSV--S----------------FSP-DGK-RL--VSGSED----GTIKVWD