Accession: AT1G79990.5 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT1G79990.5 (Len=912)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G79990.5, Len=912):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMF 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGHIKGSRRVVIGYDEGSIMVKLGREIPVASMDNSGKIIWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)         (___________

Query      321 EIHTVNIKSVGADEVTDGERLPLAVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDG 400 
WD40-rpts      ______WD 8________________)                                                     

Query      401 EHAVRESSTKIKIFSKNFQEKKTVRPTFSAEHIFGGTLLTMCSSDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIA 480 
WD40-rpts                                                                                      

Query      481 SDTSFYILKFNRDIVSSYFDGGKQIDEEGIEDAFELLNETNERVRTGLWVGDCFIYTNSSWRLNYCVGGEVTTMYHLDRP 560 
WD40-rpts                (_________________WD 9_________________)                              

Query      561 MYLLGYLANQSRVYLIDKEFNVIGYTLLLSLIEYKTLVMRGDLEQANEVLPSIPKEHHNSVAHFLESRGMTEDALEVATD 640 
WD40-rpts                                                                                      

Query      641 PDYRFELAIQLGRLAVAKDIAVEAQNESKWKQLGELAMSSGKLDMAEECMRHAMDLSGLLLLYSSLGDADGMMKLAALAK 720 
WD40-rpts                                                                                      

Query      721 EQGKNNVAFLCLFMLGQVEDCLHLLVESNRIPEAALMARSYLPSKVSEIVALWRNDLTKISPKAAESLADPEEYPNLFEE 800 
WD40-rpts                                                                                      

Query      801 WQVALSLENRAAETRGVHPPAGDYCSHADRDHTTLVDAFRIMQIEEEGRLEQGDVLDEVGEEGEDGEEEEEEDRQEESSD 880 
WD40-rpts                                                                                      

Query      881 GRQQNVEEEAVVVDADSTDGAVLVNVLTPPQE 912 
WD40-rpts

9 WD40-repeats found in QUERY=AT1G79990.5 (Len=912):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.17  369.69  0.00065       22.5%     53.24
  WD 2:  Seg  5    47-85       6.76  393.73  0.00031       20.0%     56.65
  WD 3:  Seg  9    89-127      8.02  445.76  6.1e-05       25.0%     56.56
  WD 4:  Seg 13   128-171      7.78  435.96  8.3e-05       37.5%     54.57
  WD 5:  Seg 17   172-215      7.80  436.76  8.1e-05       42.5%     53.74
  WD 6:  Seg 21   219-257     10.01  528.15  4.7e-06       45.0%     55.88
  WD 7:  Seg 25   261-299      5.29  333.03  0.00202       22.5%     54.57
  WD 8:  Seg 30   309-347      4.03  281.03  0.01012       12.5%     42.53
  WD 9:  Seg 48   491-530      4.32  293.10  0.00697        7.5%     22.33

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--E---IKRKFAQRSERVKSVDLHP--TEPWILASLYSGTLCIWN
   WD 2   47-85     -Q--T---MVKSFDVTELPVRSAKFIA--RKQWVVAGADDMFIRVYN
   WD 3   89-127    -M--D---KIKVFEAHADYIRCVAVHP--TLPYVLSSSDDMLIKLWD
   WD 4  128-171    WE--KGWLCTQIFEGHSHYVMQVTFNP-KDTNTFASASLDRTIKIWN
   WD 5  172-215    LGSPD---PNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--S---CVQTLEGHTHNVSAVSFHP--ELPIIITGSEDGTVRIWH
   WD 7  261-299    -Y--R---LENTLNYGLERVWAIGHIK--GSRRVVIGYDEGSIMVKL
   WD 8  309-347    DN--S----GKIIWAKHNEIHTVNIKS--VGADEVTDGERLPLAVKE
   WD 9  491-530    NR--D---IVSSYFDGGKQIDEEGIED--AFELLNETNERVRTGLWV

   WD40 Template    TG--E---CLRTLSGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD