Input parameters:

  Query = AT1G77080.4 (Len=196)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G77080.4, Len=196):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYDSSSGDDISKIIDRYEIQHADELRA 80  
WD40-rpts      (___________________________________________________WD 1________________________

Query       81 LDLEEKIQNYLPHKELLETVQSKLEEPNVDNVSVDSLISLEEQLETALSVSRARKAELMMEYIESLKEKEKLLREENQVL 160 
WD40-rpts      ___________________________)                                                    

Query      161 ASQMGKNTLLATDDERGMFPGSSSGNKIPETLPLLN 196 
WD40-rpts                                          

1 WD40-repeats found in QUERY=AT1G77080.4 (Len=196):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-108      3.20  246.70  0.02910       30.0%      9.18

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-108    MGRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYDSSSGDDISKIIDRYEIQHADELRALDLEEKIQNYLPHKELLETVQSKLEEPN

   WD40 Template    TGECLR-------------TLSGHTSG---------------VTSVSFSPDGKRLVSGSEDG----------------------------------------TIKVWD