Input parameters:

  Query = AT1G77080.2 (Len=192)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G77080.2, Len=192):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYDSSSGDEIEALFKPEKPQCFELDLE 80  
WD40-rpts      (___________________________________WD 1___________________________________)    

Query       81 EKIQNYLPHKELLETVQSKLEEPNVDNVSVDSLISLEEQLETALSVSRARKAELMMEYIESLKEKEKLLREENQVLASQM 160 
WD40-rpts                                                                                      

Query      161 GKNTLLATDDERGMFPGSSSGNKIPETLPLLN 192 
WD40-rpts                                      

1 WD40-repeats found in QUERY=AT1G77080.2 (Len=192):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-76       3.05  240.72  0.03492       30.0%     18.17

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-76     MGRRKIEIKRIENKSSRQVTFSKRRNGLIDKARQLSILCESSVAVVVVSASGKLYDSSSGDEIEALFKPEKPQCFE

   WD40 Template    TGECLR-------------TL----SG-----------HTSGVTSVSFSPDGKRLVSGSEDG--------TIKVWD