Input parameters:

  Query = AT1G77030.1 (Len=845)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G77030.1, Len=845):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MVEGKGFLVSSVTELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTA 80  
WD40-rpts                                                                     (________________

Query       81 AFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLM 160 
WD40-rpts      ___________________________WD 1___________________________________________)     

Query      161 HLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKI 240 
WD40-rpts                                                                                      

Query      241 SPDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRAR 320 
WD40-rpts                                                                                      

Query      321 KTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPTE 400 
WD40-rpts                                                                                      

Query      401 DEVLKNMEEVMTKTSQAIDSGVTVYGRFPQKTIDLIFNRTREMIDSSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAK 480 
WD40-rpts                                                                                      

Query      481 DLPREGLHPIFRSIIETGELEAMSFFQKIKNFRPKQTILEAEGEVAKSKHVKGPAGQWVDVMKKKRAIHEEIINTRHQQN 560 
WD40-rpts                                                                                      

Query      561 QKTSNNHLEMEAEPTTSFVDGTVEGSKVSGKKRKAQETFKDDEFFISSIPVNHHSEAGLSLRGNEGFGSNRLDAAVLDLV 640 
WD40-rpts                                                                                      

Query      641 ADDGQGIKQQQSNYHWDKKGKKYIKLNNGDRVTASGKIKTESGAKATAKKTGIYKRWQERSHKKVSRDSGDADETTRMSG 720 
WD40-rpts                                                                                      

Query      721 RGGRDGKRRQGSVPNAHVRSEIKDLDQVRKERQQKANKVSYLQSKRGGRGGRGGARGGRGGGARGGRGGSRDFGGGGRDF 800 
WD40-rpts                                                                                      

Query      801 GSSSDRGGRSGGRDFGGRRGGASTSSRGGKRGGGRGGGGKRGRGR 845 
WD40-rpts                                                   

1 WD40-repeats found in QUERY=AT1G77030.1 (Len=845):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    64-155      3.31  251.37  0.02521       20.0%     35.85

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-155    SGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIAT

   WD40 Template    TGECLRTLSGHTS---------------------GVTSVSFSPD--------------------GKRLVSGSED-----------GTIKVWD