Input parameters:

  Query = AT1G72700.1 (Len=1228)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G72700.1, Len=1228):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARGRIRSKLRLSLLYTFGCLRPATLEGQDSQPIQGPGFSRTVFCNQPHMHKKKPLRYRSNYVSTTRYNLITFFPKSLYE 80  
WD40-rpts                                                                                      

Query       81 QFHRAANLYFLVAAILSVFPLSPFNKWSMIAPLVFVVGLSMLKEALEDWRRFMQDVKINARKTCVHKSDGVFRQRKWKKV 160 
WD40-rpts                                                                                      

Query      161 SVGDIVKVEKDEFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEVSLPLDDDESFKNFMATIRCEDPNPNLYTF 240 
WD40-rpts                                                                                      

Query      241 VGNLEFERQTFPLDPSQILLRDSKLRNTTYVYGVVVFTGFDTKVMQNSTKSPSKRSRIERTMDYIIYTLLVLLILISCIS 320 
WD40-rpts                                                                                      

Query      321 SSGFAWETEFHMPKMWYLRPGEPIDFTNPINPIYAGVVHLITALLLYGYLIPISLYVSIEVVKVWQASFINQDLHMYDDE 400 
WD40-rpts                                                                                      

Query      401 SGVPANARTSNLNEELGQVHTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVEVAAAKQMAVDLEEHGEISSTPQSQT 480 
WD40-rpts                                                                                      

Query      481 KVYGTWDSSRTQEIEVEGDNNYNTPRAPIKGFGFEDNRLMNGNWLRESQPNDILQFFRILAICHTAIPELNEETGKYTYE 560 
WD40-rpts                                                                                      

Query      561 AESPDEASFLAAAREFGFEFFKRTQSSVFIRERFSGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADS 640 
WD40-rpts                                                                       (______________

Query      641 IIFERLAKNGKTYLGPTTRHLTEYGEAGLRTLALAYRKLDEDEYAAWNSEFLKAKTSIGSDRDELLETGADMIEKELILI 720 
WD40-rpts      _____________________________________________WD 1_______________________________

Query      721 GATAVEDKLQKGVPQCIDKLAQAGLKLWVLTGDKMETAINIGFACSLLRQGMRQICITSMNSEGGSQDSKRVVKENILNQ 800 
WD40-rpts      ____________________________)                                                   

Query      801 LTKAVQMVKLEKDPHAAFALIIDGKTLTYALEDDMKYQFLALAVDCASVICCRVSPKQKALVVRLVKEGTGKTTLAIGDG 880 
WD40-rpts                                                                                      

Query      881 ANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGF 960 
WD40-rpts                                                                                      

Query      961 SGQSVYNDYYLLLFNVVLTSLPVIALGVFEQDVSSEICLQFPALYQQGTKNLFFDWSRILGWMCNGVYASLVIFFLNIGI 1040
WD40-rpts                                                                                      

Query     1041 IYSQAFRDNGQTADMDAVGTTMFTCIIWAANVQIALTMSHFTWIQHVLIWGSIGMWYLFVAIYSMMPPSYSGNIYRILDE 1120
WD40-rpts                                                                                      

Query     1121 ILAPAPIYWMATLLVTVAAVLPYVAHIAFQRFLNPLDHHIIQEIKYYGRDIEDARLWTRERTKAREKTKIGFTARVDAKI 1200
WD40-rpts                                                                                      

Query     1201 RHLRSKLNKKQSNLSHFSAQDAMSPRSL 1228
WD40-rpts                                  

1 WD40-repeats found in QUERY=AT1G72700.1 (Len=1228):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 22   626-749      2.91  234.76  0.04187       22.5%     24.49

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  626-749    DEEGQILLLCKGADSIIFERLAKNGKTYLGPTTRHLTEYGEAGLRTLALAYRKLDEDEYAAWNSEFLKAKTSIGSDRDELLETGADMIEKELILIGATAVEDKLQKGVPQCIDKLAQAGLKLWV

   WD40 Template    TGECLRTLSGHTS-----------GVTS-------------------------VS-----------------FSPD-------------GKRLVSGSE-------DG-----------TIKVWD