Input parameters:

  Query = AT1G72680.1 (Len=355)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G72680.1, Len=355):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSSESVENECMCWAARDPSGLLSPHTITRRSVTTDDVSLTITHCGVCYADVIWSRNQHGDSKYPLVPGHEIAGIVTKVG 80  
WD40-rpts                                                                                      

Query       81 PNVQRFKVGDHVGVGTYVNSCRECEYCNEGQEVNCAKGVFTFNGIDHDGSVTKGGYSSHIVVHERYCYKIPVDYPLESAA 160 
WD40-rpts                                                                                      

Query      161 PLLCAGITVYAPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMK 240 
WD40-rpts                                                 (__________________________________WD

Query      241 ALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVGFPSEIKISPANLNLGMRMLAGSVTGGTKITQQMLDFCAAHKIYP 320 
WD40-rpts       1_________________________________)                                            

Query      321 NIEVIPIQKINEALERVVKKDIKYRFVIDIKNSLK 355 
WD40-rpts                                         

1 WD40-repeats found in QUERY=AT1G72680.1 (Len=355):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   204-276      2.81  230.71  0.04735       25.0%     21.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  204-276    FGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVG

   WD40 Template    TGECLRTLSGHTS---------GVTSVSFSPD-------------GKRLVSGSED-----------GTIKVWD