Input parameters:

  Query = AT1G71840.1 (Len=407)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G71840.1, Len=407):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNNTNNTEMNNLAMEEEDEGEIFLGESDVLREIDVDEEDLPEADDDDMDDDGEQFDENDDSVHTFTGHKGELYALACSP 80  
WD40-rpts                      (__________________WD 1_________________)  (_________________WD 

Query       81 TDATLVATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGAGIEW 160 
WD40-rpts      2_________________)   (_________________WD 3________________)   (_______________

Query      161 VRWHPRGHIVLAGSEDCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGHPY 240 
WD40-rpts      __WD 4________________)   (_________________WD 5________________)   (___________

Query      241 HTEGLTCLDINSNSSLAISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLIIWDLQHST 320 
WD40-rpts      _______WD 6__________________)   (__________________WD 7__________________)  (__

Query      321 PRFICEHEEGVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVHTYHGHQDAVQAISVSTNTDFIVSVSVDNTARVFESS 400 
WD40-rpts      _______________WD 8________________)   (_________________WD 9________________)  

Query      401 EFQNKVT 407 
WD40-rpts             

9 WD40-repeats found in QUERY=AT1G71840.1 (Len=407):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    17-57       5.05  323.14  0.00275        7.5%     35.49
  WD 2:  Seg  5    60-99       8.07  448.05  5.7e-05       22.5%     52.91
  WD 3:  Seg  9   103-141     10.09  531.56  4.3e-06       37.5%     56.19
  WD 4:  Seg 13   145-183      9.49  506.57  9.2e-06       30.0%     58.66
  WD 5:  Seg 17   187-225     10.20  536.03  3.7e-06       40.0%     54.48
  WD 6:  Seg 21   229-270      8.26  455.96  4.5e-05       27.5%     57.66
  WD 7:  Seg 25   274-315      8.50  465.89  3.3e-05       32.5%     54.69
  WD 8:  Seg 29   318-356      9.24  496.25  1.3e-05       32.5%     53.78
  WD 9:  Seg 33   360-398      9.77  518.30  6.4e-06       35.0%     54.89

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   17-57     EEDEGEIFLG---ESDVLREIDVDE-EDLPE---ADDDDMDDDGEQFD
   WD 2   60-99     -DDSVHTFTG---HKGELYALACSPTDATLV---AT-GGGDDKAFLWK
   WD 3  103-141    -GDWAAELPG---HKDSVSCLAFSY-DGQLL---AS-GGLDGVVQIFD
   WD 4  145-183    -GTLKCVLDG---PGAGIEWVRWHP-RGHIV---LA-GSEDCSLWMWN
   WD 5  187-225    -EAYLNMFSG---HNLNVTCGDFTP-DGKLI---CT-GSDDASLIVWN
   WD 6  229-270    -CESIHIVKGHPYHTEGLTCLDINS-NSSLA---IS-GSKDGSVHIVN
   WD 7  274-315    -GKVVSSLNS---HTDSVECVKFSP-SSATIPLAAT-GGMDKKLIIWD
   WD 8  318-356    -HSTPRFICE---HEEGVTSLTWIG-TSKYL---AT-GCANGTVSIWD
   WD 9  360-398    -GNCVHTYHG---HQDAVQAISVST-NTDFI---VS-VSVDNTARVFE

   WD40 Template    TGECLRTLSG---HTSGVTSVSFSP-DGKRL---VS-GSEDGTIKVWD