Input parameters:

  Query = AT1G71370.1 (Len=558)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G71370.1, Len=558):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSSPPKTITKALPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRR 80  
WD40-rpts                                                         (____________________________

Query       81 SNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRM 160 
WD40-rpts      __________________WD 1______________________________________________)           

Query      161 EFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGL 240 
WD40-rpts                                                                                      

Query      241 YCEYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASS 320 
WD40-rpts                                                                                      

Query      321 GVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYVEFMRIRRVPLQERKCSENA 400 
WD40-rpts                                                                                      

Query      401 SDVIPIIRSLAIKDRAVLEKGLQAFVSFVRAYKEHHCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQ 480 
WD40-rpts                                                                                      

Query      481 GITFEDIKYKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL 558 
WD40-rpts                                                                                    

1 WD40-repeats found in QUERY=AT1G71370.1 (Len=558):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    52-149      3.13  243.90  0.03169       17.5%     41.03

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   52-149    SHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGT

   WD40 Template    TGECLRTLSGHTS-------------------------GVTSVSFSPD---------------------GKRLVSGSED------------GTIKVWD