Input parameters:

  Query = AT1G68440.1 (Len=306)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G68440.1, Len=306):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVPVINRIRDFEVGINSINDPSFLSRSVAVSGIGKLHQAYGFWKWGALIIAFLAYFTNFVSKLNSLVVRLRKIDVSVSS 80  
WD40-rpts                                                                                      

Query       81 PTLFDDYDSDSDVSCSSTVSSDDEKDEEDEADDEDEDVDSIFNRRRVNGGFRVRGSDYYDDDDDQGDNGNCTWMGRRYSG 160 
WD40-rpts                                                                                      

Query      161 SFGDLFSWPDLGGIGSSGVVKLWDHLDIDGDDHENVVATFLKNYNSTSSPFFWAAEKKGVDAVKVKACDPRAGFRMPALL 240 
WD40-rpts                            (_____________________WD 1____________________)           

Query      241 AEWRQPGRLLGNIIGVDTGGVEKVYVRDDVSGEIAVGDLRKFNGVLTDLTECEAETWWDADVLISG 306 
WD40-rpts                                                                        

1 WD40-repeats found in QUERY=AT1G68440.1 (Len=306):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   183-229      3.06  240.99  0.03464       12.5%      5.60

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  183-229    WDHLDIDGDDHENVVATFLKNYNSTSSPFFWAAEKKGVDAVKVKACD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS-------GSEDGTIKVWD