Input parameters:

  Query = AT1G64610.2 (Len=647)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G64610.2, Len=647):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGTPGDEEDEDRFFDAPEVVSDDFGLHLWTSTPESVSTRRRKFLQSMGLSFKKTATDDDSEDELEPSHTDSNVVSEVVNV 80  
WD40-rpts                                                    (_________________WD 1____________

Query       81 SSGVKEIDLLVRNESTTSSGFDVSSVSSSDTDDQTLLARNDASSSTSTMPGGLSESSSSKSGSFGDFHNSPFSQRDDLLK 160 
WD40-rpts      _____)   (_________________WD 2________________)                                

Query      161 KGAKSWLKKLGVLTHVLESMDCESVRTQLHQVARVQTHKKQFKELSSMCIDQEFSAHDGSILAMKFSPDGKYIASAGEDC 240 
WD40-rpts           (_________________WD 3________________)   (_________________WD 4___________

Query      241 VVRVWSITEEERTDTYEVAEVDSGVYFGMNQRSQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKG 320 
WD40-rpts      _____)           (_____________________WD 5____________________)       (________

Query      321 HIGEILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDY 400 
WD40-rpts      ________WD 6________________)   (_________________WD 7________________)(________

Query      401 TDIRDIVTAVCYRPDAKGAVIGSMTGNCRFYHIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQ 480 
WD40-rpts      __________WD 8_________________)             (_________________WD 9_____________

Query      481 IRIICGEDVICKLKASSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSETPKSIRSYEGFLSHNASVAIPWL 560 
WD40-rpts      ____)(_________________WD10_________________)             (___________________WD

Query      561 RQGRRDGLSECITDLDMKIPKVDCFSPMKGSTTWPEEKLEDVAMSNRGKLKLLRSAWQPHLWGLVIVTATWDGRIRVFHN 640 
WD40-rpts      11__________________)                                                           

Query      641 YGLPIRV 647 
WD40-rpts             

11 WD40-repeats found in QUERY=AT1G64610.2 (Len=647):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    47-86       8.28  456.73  4.3e-05       12.5%     39.59
  WD 2:  Seg  5    90-128      7.27  415.01  0.00016       15.0%     47.08
  WD 3:  Seg 12   166-204      4.14  285.66  0.00877        5.0%     22.71
  WD 4:  Seg 16   208-246      9.62  512.20  7.8e-06       32.5%     54.76
  WD 5:  Seg 21   258-304      4.95  319.00  0.00312       15.0%     43.60
  WD 6:  Seg 25   312-349      7.54  426.23  0.00011       30.0%     53.39
  WD 7:  Seg 29   353-391      7.91  441.50  7.0e-05       47.5%     55.66
  WD 8:  Seg 33   392-432      8.30  457.34  4.3e-05       27.5%     54.79
  WD 9:  Seg 38   446-485      7.16  410.55  0.00018       17.5%     40.06
  WD10:  Seg 41   486-525     10.95  566.79  1.4e-06       37.5%     55.34
  WD11:  Seg 45   539-581      5.10  325.24  0.00257       20.0%     33.23

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   47-86     MGL--S---FKKTATDDDSEDELEPSH-T----DS----NVVSEVVNVSSGVKE
   WD 2   90-128    -LV--R---NESTTSSGFDVSSVSSSD-T----DD----QTLLARNDASSSTST
   WD 3  166-204    ---WLK---KLGVLTHVLESMDCESVR-T----QL----HQVARVQTHKKQFKE
   WD 4  208-246    -MC--I---DQEFSAHDGSILAMKFSP-D----GK----YIASAGEDCVVRVWS
   WD 5  258-304    VAE--VDSGVYFGMNQRSQIEPLKINN-EKTEKKS----SFLRKSSDSTCVVLP
   WD 6  312-349    -EK--P---LHEFKGHIGEILDLSWSE-K----G-----YLLSSSVDETVRLWR
   WD 7  353-391    -DE--C---LRTF-THNNFVTCVAFNPVD----DN----YFISGSIDGKVRIWD
   WD 8  392-432    VTR--C--RVVDYTDIRDIVTAVCYRP-D----AK----GAVIGSMTGNCRFYH
   WD 9  446-485    VHG--K---KKVASKRISGLQYLPSDS-D----SD----KVMVTSADSQIRIIC
   WD10  486-525    GED--V---ICKLKASSLRTTSASFIS-D----GK----HIISTSEDSYINVWS
   WD11  539-581    -PK--S---IRSYEGFLSHNASVAIPW-L----RQGRRDGLSECITDLDMKIPK

   WD40 Template    TGE--C---LRTLSGHTSGVTSVSFSP-D----GK----RLVSGSEDGTIKVWD