WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT1G64610.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT1G64610.1 (Len=647) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT1G64610.1, Len=647): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGTPGDEEDEDRFFDAPEVVSDDFGLHLWTSTPESVSTRRRKFLQSMGLSFKKTATDDDSEDELEPSHTDSNVVSEVVNV 80
WD40-rpts (_________________WD 1____________
Query 81 SSGVKEIDLLVRNESTTSSGFDVSSVSSSDTDDQTLLARNDASSSTSTMPGGLSESSSSKSGSFGDFHNSPFSQRDDLLK 160
WD40-rpts _____) (_________________WD 2________________) (_________________WD 3_____
Query 161 KGAKSWLKKLGVLTHVLESMDCESVRTQLHQVARVQTHKKQFKELSSMCIDQEFSAHDGSILAMKFSPDGKYIASAGEDC 240
WD40-rpts ___________) (_________________WD 4___________
Query 241 VVRVWSITEEERTDTYEVAEVDSGVYFGMNQRSQIEPLKINNEKTEKKSSFLRKSSDSTCVVLPPTIFSISEKPLHEFKG 320
WD40-rpts _____) (________
Query 321 HIGEILDLSWSEKGYLLSSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDY 400
WD40-rpts ________WD 5________________) (_________________WD 6________________)(________
Query 401 TDIRDIVTAVCYRPDAKGAVIGSMTGNCRFYHIFENQLQMDQEINVHGKKKVASKRISGLQYLPSDSDSDKVMVTSADSQ 480
WD40-rpts __________WD 7_________________) (_________________WD 8____________
Query 481 IRIICGEDVICKLKASSLRTTSASFISDGKHIISTSEDSYINVWSYSQLPSKKPYSETPKSIRSYEGFLSHNASVAIPWL 560
WD40-rpts ____)(_________________WD 9_________________) (___________________WD
Query 561 RQGRRDGLSECITDLDMKIPKVDCFSPMKGSTTWPEEKLEDVAMSNRGKLKLLRSAWQPHLWGLVIVTATWDGRIRVFHN 640
WD40-rpts 10__________________) (________________________WD11________________________)
Query 641 YGLPIRV 647
WD40-rpts
 11 WD40-repeats found in QUERY=AT1G64610.1 (Len=647): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 47-86 8.47 464.47 3.4e-05 12.5% 38.76 WD 2: Seg 5 90-128 7.26 414.47 0.00016 15.0% 45.32 WD 3: Seg 9 134-172 5.54 343.63 0.00146 20.0% 37.90 WD 4: Seg 15 208-246 9.66 513.54 7.4e-06 32.5% 54.09 WD 5: Seg 24 312-349 7.67 431.40 9.5e-05 30.0% 51.17 WD 6: Seg 28 353-391 7.90 440.92 7.1e-05 47.5% 54.37 WD 7: Seg 32 392-432 8.29 457.16 4.3e-05 27.5% 55.62 WD 8: Seg 37 447-485 6.00 362.35 0.00081 20.0% 39.06 WD 9: Seg 40 486-525 10.92 565.60 1.5e-06 37.5% 53.78 WD10: Seg 44 539-581 5.24 331.25 0.00214 20.0% 17.92 WD11: Seg 48 586-639 3.26 249.32 0.02685 22.5% 33.07Multiple sequence alignment of 11 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 47-86 MGLS-FKKTATDDDSEDELEPSH-TDSNV---------------VSE----VVNVSSGVKE WD 2 90-128 -LVR-NESTTSSGFDVSSVSSSD-TDDQT---------------LLA----RNDASSSTST WD 3 134-172 -SES-SSSKSGSFGDFHNSPFSQ-RDDLL---------------KKG----AKSWLKKLGV WD 4 208-246 -MCI-DQEFSAHDGSILAMKFSP-DGKYI---------------ASA----GEDCVVRVWS WD 5 312-349 -EKP-LHEFKGHIGEILDLSWSE-KG-YL---------------LSS----SVDETVRLWR WD 6 353-391 -DEC-LRTF-THNNFVTCVAFNPVDDNYF---------------ISG----SIDGKVRIWD WD 7 392-432 VTRCRVVDYTDIRDIVTAVCYRP-DAKGA---------------VIG----SMTGNCRFYH WD 8 447-485 HGK--KKVASKRISGLQYLPSDS-DSDKV---------------MVT----SADSQIRIIC WD 9 486-525 GEDV-ICKLKASSLRTTSASFIS-DGKHI---------------IST----SEDSYINVWS WD10 539-581 -PKS-IRSYEGFLSHNASVAIPW-LRQGR---------------RDGLSECITDLDMKIPK WD11 586-639 -SPM-KGSTTWPEEKLEDVAMSN-RGKLKLLRSAWQPHLWGLVIVTA----TWDGRIRVFH WD40 Template TGEC-LRTLSGHTSGVTSVSFSP-DGKRL---------------VSG----SEDGTIKVWD |
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