Input parameters:

  Query = AT1G63660.2 (Len=434)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G63660.2, Len=434):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 METPTMKPDTVLILDYGSQYTHLITRRIRSLNVFSLVISGTSSLKSITSYNPRVVILSGGPHSVHALDAPSFPEGFIEWA 80  
WD40-rpts                                                                                      

Query       81 ESNGVSVLGICYGLQLIVQKLGGVVVEGESKEYGKMEIEVKGKSEIFGSESGGEKQMVWMSHGDEAVKLPEGFEVVAQSA 160 
WD40-rpts                                                                                      

Query      161 QGAVAALESRKKKIYGLQYHPEVTHSPKGMETLRHFLFDVCGVSADWKMEDLMEEEIKVINKTVASDEHVICALSGGVDS 240 
WD40-rpts               (___________________________________________WD 1_______________________

Query      241 TVAATLVHKAIGDRLHCIFVDNGLLRYKEQERVMDTFERDLHLPVTCVDASERFLSELKGVVDPETKRKIIGREFINIFD 320 
WD40-rpts      ____________________)                                                           

Query      321 QFAQELEKKHGKKPAFLVQGTLYPDVIESCPPPGTDRTHSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRELGRILN 400 
WD40-rpts                                                                                      

Query      401 VPVGFLKRHPFPGPGLAVRVLGDVTQGNALEVLR 434 
WD40-rpts                                        

1 WD40-repeats found in QUERY=AT1G63660.2 (Len=434):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   170-261      3.60  263.21  0.01753       25.0%     11.15

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  170-261    RKKKIYGLQYHPEVTHSPKGMETLRHFLFDVCGVSADWKMEDLMEEEIKVINKTVASDEHVICALSGGVDSTVAATLVHKAIGDRLHCIFVD

   WD40 Template    TGECLRTLSGHTSGVTSVS--------------FSPDGKR-----------------------LVSGSED---------------GTIKVWD