Input parameters:

  Query = AT1G63440.1 (Len=995)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G63440.1, Len=995):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATKLLSLTCIRKERFSERYPLVRKHLTRSRDGGGGSSSETAAFEIDDPISRAVFQVLGMTCSACAGSVEKAIKRLPGIH 80  
WD40-rpts                                                                                      

Query       81 DAVIDALNNRAQILFYPNSVDVETIRETIEDAGFEASLIENEANERSRQVCRIRINGMTCTSCSSTIERVLQSVNGVQRA 160 
WD40-rpts                                                                                      

Query      161 HVALAIEEAEIHYDPRLSSYDRLLEEIENAGFEAVLISTGEDVSKIDLKIDGELTDESMKVIERSLEALPGVQSVEISHG 240 
WD40-rpts                                                                                      

Query      241 TDKISVLYKPDVTGPRNFIQVIESTVFGHSGHIKATIFSEGGVGRESQKQGEIKQYYKSFLWSLVFTVPVFLTAMVFMYI 320 
WD40-rpts                                                                                      

Query      321 PGIKDLLMFKVINMLTVGEIIRCVLATPVQFVIGWRFYTGSYKALRRGSANMDVLIALGTNAAYFYSLYTVLRAATSPDF 400 
WD40-rpts                                                                                      

Query      401 KGVDFFETSAMLISFIILGKYLEVMAKGKTSQAIAKLMNLAPDTAILLSLDKEGNVTGEEEIDGRLIQKNDVIKIVPGAK 480 
WD40-rpts                                                                                      

Query      481 VASDGYVIWGQSHVNESMITGEARPVAKRKGDTVIGGTLNENGVLHVKVTRVGSESALAQIVRLVESAQLAKAPVQKLAD 560 
WD40-rpts                                                                                      

Query      561 RISKFFVPLVIFLSFSTWLAWFLAGKLHWYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQG 640 
WD40-rpts                                                                                      

Query      641 VLIKGGQALERAHKVNCIVFDKTGTLTMGKPVVVKTKLLKNMVLREFYELVAATEVNSEHPLAKAIVEYAKKFRDDEENP 720 
WD40-rpts                                                                                      

Query      721 AWPEACDFVSITGKGVKATVKGREIMVGNKNLMNDHKVIIPDDAEELLADSEDMAQTGILVSINSELIGVLSVSDPLKPS 800 
WD40-rpts                                                                                      

Query      801 AREAISILKSMNIKSIMVTGDNWGTANSIAREVGIDSVIAEAKPEQKAEKVKELQAAGHVVAMVGDGINDSPALVAADVG 880 
WD40-rpts                (___________________________________________WD 1______________________

Query      881 MAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMGIPIAAGVLFPGTRFRLPPWIAGAAMA 960 
WD40-rpts      _____________________)                                                          

Query      961 ASSVSVVCCSLLLKNYKRPKKLDHLEIREIQVERV 995 
WD40-rpts                                         

1 WD40-repeats found in QUERY=AT1G63440.1 (Len=995):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 24   811-902      3.91  276.30  0.01171       15.0%     21.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  811-902    MNIKSIMVTGDNWGTANSIAREVGIDSVIAEAKPEQKAEKVKELQAAGHVVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSN

   WD40 Template    TGECLRTLSGHT-----------------SGVTS----------------VSFSPDGKR-----------LVSGS--------EDGTIKVWD