Input parameters:

  Query = AT1G62180.2 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G62180.2, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALAVTSSSTAISGSSFSRSGASSESKALQICSIRLSDRTHLSQRRYSMKPLNAESHSRSESWVTRASTLIAPEVEDFEQ 80  
WD40-rpts                                                                                      

Query       81 LAKKLEDASPLEIMDKALERFGDQIAIAFSGAEDVALIEYARLTGKPFRVFSLDTGRLNPETYRLFDAVEKQYGIRIEYM 160 
WD40-rpts                           (__________________________________________________WD 1____

Query      161 FPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPIVQVDPVFEGLDGGVGS 240 
WD40-rpts      ______________________________________________)                                 

Query      241 LVKWNPLANVEGADVWNFLRTMDVPVNALHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEEDGA 320 
WD40-rpts                                                                                      

Query      321 ADSKPAAVQEIFESNNVVALSKGGVENLLKLENRKEAWLVVLYAPWCPFCQAMEASYIELAEKLAGKGVKVAKFRADGEQ 400 
WD40-rpts                                                                                      

Query      401 KEFAKQELQLGSFPTILLFPKRAPRAIKYPSEHRDVDSLMSFVNLLR 447 
WD40-rpts                                                     

1 WD40-repeats found in QUERY=AT1G62180.2 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   102-207      3.09  242.23  0.03335       30.0%     14.01

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  102-207    GDQIAIAFSGAEDVALIEYARLTGKPFRVFSLDTGRLNPETYRLFDAVEKQYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWI

   WD40 Template    TGECLRTLSG--------------HTSGVTSVSFSPDG----------------------------------KRLVSGSEDG--------TI----------KVWD