Input parameters:

  Query = AT1G61210.2 (Len=1179)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G61210.2, Len=1179):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKRGYKLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSG 80  
WD40-rpts         (__________________WD 1_________________)(__________________WD 2_____________

Query       81 VIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSG 160 
WD40-rpts      _____)   (_________________WD 3________________)   (_________________WD 4_______

Query      161 GLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRT 240 
WD40-rpts      _________)   (_________________WD 5________________)   (________________WD 6____

Query      241 LFCGLDDSLKVYSWEPVVCHDGVDMGWSTLGDLCISEGKLLGCSYYQNSVGIWVSDISQIEPYGIGSADKKECVEKILSA 320 
WD40-rpts      ____________)   (________________WD 7________________)   (______________WD 8____

Query      321 LDDQSFDRIKSTPRRSSSPDYETKEIKNIYIDCGNSAVAHKSGSLSTPATSTGQAGDNKSLVVHSVVPRDSDIGKDSSDS 400 
WD40-rpts      _________)                    (_________________WD 9________________)           

Query      401 GKESITFSKTKPGMLLRPAYVRKTPTKFDETKKQSVAVGYLKKSGLDGEKKLDTETAFDSEMSGRNPYDADDSIIKSITN 480 
WD40-rpts                                                                                      

Query      481 KFEQALLPESPTDEAKCMLLKPPRVQRSPSTKYNEARWATSTDSGALDSKKNGLESSRDMDLPTGLRDDRGSNPCEEDIE 560 
WD40-rpts                                                                                      

Query      561 NKSISSRSERVLSPEKAGDELKSLESPGGSKESKSVKVVRGVKVVSGRTRSLVERFERGEKITHSEDKAASATVVHSSNS 640 
WD40-rpts                                                                                      

Query      641 VEEEPLTASVQTVSMMPTQVMPVKLDQATNSTTVDVPVLSTRRTKSTPVRVMPVVLGRDTSMATDTPPVTSTRPDRTSAT 720 
WD40-rpts                                                                                      

Query      721 NLTSDVSGVTSKRQTRTSPAPVMPMILNQTTKMKSDEPSITSTWPDRTSATDLTSDVSGVISSRQTRTSPAPVMPMKLNQ 800 
WD40-rpts                                                                                      

Query      801 KTKIKSDEPPITSTRPDRPSATNLTSDESPVTSTRQAKTSPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSARVMPV 880 
WD40-rpts                                                                                      

Query      881 ILNQASTTYDERPLSSSRSARTSPARIMPMKLNQADNMPSYEPPVALTRSARNSPARVIPVKLNQATNVTADASHIRSRQ 960 
WD40-rpts                                                                                      

Query      961 RFSPTQTLATPAVFDQVTDMTLDETTKTQQSSDILTQKEEPQISGREDDGDIWEILMRTHSEVLNTLQSRLTKLQIVRHF 1040
WD40-rpts                                                                                      

Query     1041 WERSDIKGAIAALRKLSDHSVQADVINILTDKTEILTLDLFSQLAPVLTGLLGSKTERPVNVSLEMLLKLVAVFGTVIQS 1120
WD40-rpts                                                                                      

Query     1121 TVSARRVVGVDLHAEERLQICQSCSAELQKVQKILPLLTRRGGLIARKAQELNLVLQTP 1179
WD40-rpts                                                                 

9 WD40-repeats found in QUERY=AT1G61210.2 (Len=1179):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       7.43  421.58  0.00013       22.5%     54.49
  WD 2:  Seg  5    45-86       9.59  510.95  8.1e-06       42.5%     56.37
  WD 3:  Seg  9    90-128     10.38  543.48  2.9e-06       40.0%     57.01
  WD 4:  Seg 13   132-170     10.79  560.39  1.7e-06       42.5%     55.67
  WD 5:  Seg 17   174-212      9.68  514.69  7.2e-06       35.0%     55.75
  WD 6:  Seg 21   216-253      7.29  415.90  0.00015       32.5%     57.43
  WD 7:  Seg 25   257-294      5.38  336.97  0.00179       17.5%     56.18
  WD 8:  Seg 29   298-330      2.99  238.34  0.03756       10.0%     33.94
  WD 9:  Seg 33   351-389      3.55  261.28  0.01860       20.0%      0.01

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     RGY--KLQEFLAHSANVNCLSIGKKTSRLFITGGDDYKVNLWA
   WD 2   45-86     IGKPTSLMSLCGHTSAVDSVAFDSAEVL-VLAGASSGVIKLWD
   WD 3   90-128    -AK--MVRAFTGHRSNCSAVEFHPFGEF-LASGSSDANLKIWD
   WD 4  132-170    -KG--CIQTYKGHSRGISTIRFTPDGRW-VVSGGLDNVVKVWD
   WD 5  174-212    -GK--LLHEFKFHEGPIRSLDFHPLEFL-LATGSADRTVKFWD
   WD 6  216-253    -FE--LIGSTRPEATGVRSIKFHPDGRT-LFCGL-DDSLKVYS
   WD 7  257-294    -VV--CHDGVDMGWSTLGDLCIS-EGKL-LGCSYYQNSVGIWV
   WD 8  298-330    -SQ--IEPYGIGSADKKECV------EK-ILSALDDQSFDRIK
   WD 9  351-389    -ID--CGNSAVAHKSGSLSTPATSTGQA-GDNKSLVVHSVVPR

   WD40 Template    TGE--CLRTLSGHTSGVTSVSFSPDGKR-LVSGSEDGTIKVWD