Input parameters:

  Query = AT1G60160.1 (Len=827)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G60160.1, Len=827):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEIEEGSSNNSIRRVGTGSSDRRWVDGSEVDSETPLFSEIRDRDYSFGNLRRRLMKKPKRADSLDVEAMEIAGSHGHNL 80  
WD40-rpts                                                                                      

Query       81 KDLSLLTTLGIAFQTLGVVYGDMGTSPLYVFSDVFSKVPIRSEVDVLGALSLVIYTIAVIPLAKYVFVVLKANDNGEGGT 160 
WD40-rpts                                                                                      

Query      161 FALYSLICRYAKVNKLPNQQPADEQISSFRLKLPTPELERALGIKEALETKGYLKTLLLLLVLMGTSMIIGDGILTPAMS 240 
WD40-rpts                                                                                      

Query      241 VMSAMSGLQGEVKGFGTNALVMSSIVILVALFSIQRFGTGKVGFLFAPVLALWFFSLGAIGIYNLLKYDFTVIRALNPFY 320 
WD40-rpts                                                                                      

Query      321 IVLFFNKNSKQAWSALGGCVLCITGAEAMFADLGHFSVRSIQMAFTCVVFPCLLLAYMGQAAYLTKHPEASARIFYDSVP 400 
WD40-rpts                     (_____________________________________________________WD 1_______

Query      401 KSLFWPVFVIATLAAMIASQAMISATFSCVKQAMALGCFPRLKIIHTSKKRIGQIYIPVINWFLMIMCILVVSIFRSTTH 480 
WD40-rpts      _____________________________________________)                                  

Query      481 IANAYGIAEVGVMMVSTVLVTLVMLLIWQTNIFLALCFPLIFGSVETIYLLAVLTKILEGGWVPLVFATFFLTVMYIWNY 560 
WD40-rpts                                                                                      

Query      561 GSVLKYQSEVRERISMDFMRELGSTLGTIRIPGIGLLYNELVQGIPSIFGQFLLTLPAIHSTIIFVCIKYVPVPVVPQEE 640 
WD40-rpts                                                                                      

Query      641 RFLFRRVCPKDYHMFRCIARYGYKDVRKEDSRVFEQLLIESLEKFLRCEALEDALESTLNDFDPDRVSVASDTYTDDLMA 720 
WD40-rpts                                                                                      

Query      721 PLIHRAKRSEPEQELDSEVLPSSSVGSSMEEDPALEYELAALREATDSGLTYLLAHGDVRAKKNSIFVKKLVINYFYAFL 800 
WD40-rpts                                                                                      

Query      801 RRNCRAGAANLTVPHMNILQAGMTYMV 827 
WD40-rpts                                 

1 WD40-repeats found in QUERY=AT1G60160.1 (Len=827):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   336-446      3.27  249.54  0.02667       22.5%     21.81

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  336-446    LGGCVLCITGAEAMFADLGHFSVRSIQMAFTCVVFPCLLLAYMGQAAYLTKHPEASARIFYDSVPKSLFWPVFVIATLAAMIASQAMISATFSCVKQAMALGCFPRLKIIH

   WD40 Template    TGECLRTLSG---------HTSG--------------------------------VTSVSFSPDGKRL-------------------VSG-----------SEDGTIKVWD