Input parameters:

  Query = AT1G57540.2 (Len=103)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G57540.2, Len=103):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALRQKLGWSEGDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLRWAGCGALSVSTSTAMLVRLF 80  
WD40-rpts                 (______________________________________WD 1__________________________

Query       81 SPECEPQNIAAYDNIKTPQASLP 103 
WD40-rpts      ____________)          

1 WD40-repeats found in QUERY=AT1G57540.2 (Len=103):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    12-93       3.40  255.09  0.02250       27.5%      6.00

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-93     GDLMRSDAKPCSRLMKQTAAIFTVGGALGFWVLCRLHYGPRITVPRSLRWAGCGALSVSTSTAMLVRLFSPECEPQNIAAYD

   WD40 Template    GECLRTLSG------------HTSGV-------------------TSVSFSPDGKRLVSG------------SEDGTIKVWD