Input parameters:

  Query = AT1G55350.5 (Len=2179)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G55350.5, Len=2179):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEGDERGVLLACVISGTLFTVFGSGSFWILWAVNWRPWRLYSWIFARKWPKVLQGPQLDILCGVLSLFAWIVVVSPIAIL 80  
WD40-rpts                                                                                      

Query       81 IGWGSWLIVILDRHIIGLAIIMAGTALLLAFYSIMLWWRTQWQSSRAVALLLLLGVALLCAYELCAVYVTAGAHASQQYS 160 
WD40-rpts                                                                                      

Query      161 PSGFFFGVSAIALAINMLFICRMVFNGNGLDVDEYVRRAYKFAYSDCIEVGPVACLPEPPDPNELYPRQTSRASHLGLLY 240 
WD40-rpts                                                                                      

Query      241 LGSLVVLLAYSVLYGLTARESRWLGGITSAAVIVLDWNIGACLYGFKLLQNRVLALFVAGISRLFLICFGIHYWYLGHCI 320 
WD40-rpts                                                                                      

Query      321 SYIFVASVLSGAAVSRHLSITDPSAARRDALQSTVIRLREGFRRKEQNSSSSSSDGCGSSIKRSSSIDAGHTGCTNEANR 400 
WD40-rpts                                                                                      

Query      401 TAESCTADNLTRTGSSQEGINSDKSEESGRPSLGLRSSSCRSVVQEPEAGTSYFMDKVSDQNNTLVVCSSSGLDSQGYES 480 
WD40-rpts                                                                                      

Query      481 STSNSANQQLLDMNLALAFQDQLNNPRIASILKKKAKEGDLELTNLLQDKGLDPNFAVMLKEKNLDPTILALLQRSSLDA 560 
WD40-rpts                                                                                      

Query      561 DRDHRDNTDITIIDSNSVDNTLPNQISLSEELRLRGLEKWLKLSRLLLHHVAGTPERAWGLFSLVFILETIIVAIFRPKT 640 
WD40-rpts                                                                                      

Query      641 ITIINSSHQQFEFGFSVLLLSPVVCSIMAFLRSLQVEEMALTSKSRKYGFVAWLLSTSVGLSLSFLSKSSVLLGISLTVP 720 
WD40-rpts                                                                                      

Query      721 LMAACLSIAVPIWMHNGYQFWVPQLSCGDQARDLRSPRIKGFILWICVVLFAGSVISLGAIISAKPLDDLKYKLFSAREN 800 
WD40-rpts                                                                                      

Query      801 NVTSPYTSSVYLGWAMSSGIALVVTAILPIVSWFATYRFSHSSAVCLMIFSVVLVAFCGTSYLEVVKSRDDQLPTKGDFL 880 
WD40-rpts                                                                                      

Query      881 AALLPLACIPALLSLCCGMVKWKDDCWILSRGVYVFFSIGLLLLFGAIAAVIAVKPWTIGVSFLLVLFLMVVTIGVIHLW 960 
WD40-rpts                                                                                      

Query      961 ASNNFYLTRKQTSFVCFLALLLGLAAFLLGWHQDKAFAGASVGYFTFLSLLAGRALAVLLSPPIVVYSPRVLPVYVYDAH 1040
WD40-rpts                                                                                      

Query     1041 ADCGKNVSAAFLVLYGIALATEGWGVVASLIIYPPFAGAAVSAITLVVAFGFAVSRPCLTLEMMEVAVRFLSKDTIVQAI 1120
WD40-rpts                                                                                      

Query     1121 SRSATKTRNALSGTYSAPQRSASSAALLVGDPSAMRDKAGNFVLPRDDVMKLRDRLRNEERVAGSIFYKMQCRKGFRHEP 1200
WD40-rpts                                                                                      

Query     1201 PTNVDYRRDMCAHARVLALEEAIDTEWVYMWDKFGGYLLLLLGLTAKAERVQDEVRLRLFLDSIGFSDLSARKISKWKPE 1280
WD40-rpts                                                        (_____________________________

Query     1281 DRRQFEIIQESYLREKEMEEESLMQRREEEGRGKERRKALLEKEERKWKEIEASLIPSIPNAGSREAAAMAAAIRAVGGD 1360
WD40-rpts      ________________________________________________WD 1____________________________

Query     1361 SVLEDSFARERVSGIARRIRTAQLERRAQQVKTYFYILQVFFLMMLINGELTKKSYYQTGISGAVCVLDDEPMISGKHCG 1440
WD40-rpts      _________________________________________________)                              

Query     1441 QMDSSVCQSQKISFSVTAMIQSDSGPVCLFGTEFQKKVCWEILVAGSEQGIEAGQVGLRLITKGERQTTVAREWYIGATS 1520
WD40-rpts                                                                                      

Query     1521 ITDGRWHTVTITIDADAGEATCYIDGGFDGYQNGLPLSIGSAIWEQGAEVWLGVRPPIDVDAFGRSDSDGVESKMHIMDV 1600
WD40-rpts                                                                                      

Query     1601 FLWGKCLSEEEAASLHAAIGMADLDMIDLSDDNWQWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDFV 1680
WD40-rpts                                                                                      

Query     1681 MSVDSFARRHRKPRMETQEDINQRMRSVELAVKEALSARGDKQFTDQEFPPNDRSLFVDTQNPPSKLQVVSEWMRPDSIV 1760
WD40-rpts                                                                                      

Query     1761 KENGSDSRPCLFSGDANPSDVCQGRLGDCWFLSAVAVLTEVSRISEVIITPEYNEEGIYTVRFCIQGEWVPVVIDDWIPC 1840
WD40-rpts                                                                                      

Query     1841 ESPGKPAFATSRKLNELWVSMVEKAYAKLHGSYEALEGGLVQDALVDLTGGAGEEIDLRSAQAQIDLASGRLWSQLLRFK 1920
WD40-rpts                                                                                      

Query     1921 QEGFLLGAGSPSGSDVHVSSSGIVQGHAYSVLQVREVDGHRLVQIRNPWANEVEWNGPWSDSSPEWTDRMKHKLKHVPQS 2000
WD40-rpts                                                                                      

Query     2001 KEGIFWMSWQDFQIHFRSIYVCRVYPREMRYSVNGQWRGYSAGGCQDYSSWHQNPQFRLRATGSDASLPIHVFITLTQGV 2080
WD40-rpts                                                                                      

Query     2081 GFSRTTPGFRNYQSSHDSQLFYIGLRILKTRGRRAAYNIFLHESVGGTDYVNSREISCEMVLDPDPKGYTIVPTTIHPGE 2160
WD40-rpts                                                                                      

Query     2161 EAPFVLSVFTKASIVLEAL 2179
WD40-rpts                         

1 WD40-repeats found in QUERY=AT1G55350.5 (Len=2179):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 34  1251-1410     2.84  231.98  0.04557       22.5%      2.98

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1251-1410   VQDEVRLRLFLDSIGFSDLSARKISKWKPEDRRQFEIIQESYLREKEMEEESLMQRREEEGRGKERRKALLEKEERKWKEIEASLIPSIPNAGSREAAAMAAAIRAVGGDSVLEDSFARERVSGIARRIRTAQLERRAQQVKTYFYILQVFFLMMLINGE

   WD40 Template    TGECLR-TLSGHTSGVTSVS------FSPDGKRL--------------------------------------------------------VSGS--------------EDGTIK-------------------------------------------VWD