Input parameters:

  Query = AT1G54280.1 (Len=1240)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G54280.1, Len=1240):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARRRIRSRIRKSHFYTFRCLRPKTLDDQGPHVINGPGYTRIVHCNQPHLHLATKLIRYRSNYVSTTRYNLLTFLPKCLY 80  
WD40-rpts                                                                                      

Query       81 EQFHRVANFYFLVAAILSVFPLSPFNKWSMIAPLVFVVGLSMGKEALEDWRRFMQDVEVNSRKASVHKGSGDFGRRTWKR 160 
WD40-rpts                                                                                      

Query      161 IRVGDIVRVEKDEFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRCLDATLALEKDESFQNFSGTIKCEDPNPNLYT 240 
WD40-rpts                                                                                      

Query      241 FVGNLECDGQVYPLDPNQILLRDSKLRNTAYVYGVVVFTGHDTKVMQNSTKSPSKRSRIEKRMDYIIYTLFALLLTVSFI 320 
WD40-rpts                                                                                      

Query      321 SSLGFAVMTKLLMAEWWYLRPDKPESLTNPTNPLYAWVVHLITALLLYGYLIPISLYVSIEVVKVLQAHFINQDLQLYDS 400 
WD40-rpts                                                                                      

Query      401 ESGTPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRASEVELAAAKQMAMDLEEKGEEVANLSMN 480 
WD40-rpts                                                                                      

Query      481 KGRTQRYAKLASKTSSDFELETVVTASDEKDQKQNTGVKGFSFEDNRLMNENWLNEPNSDDILMFFRILAVCHTAIPEVD 560 
WD40-rpts                                                                                      

Query      561 EDTGMCTYEAESPDEVAFLVASREFGFEFTKRTQSSVFIAERFSSSGQPVDREYKILNLLDFTSKRKRMSAIVRDEEGQI 640 
WD40-rpts                                                                                (_____

Query      641 LLLCKGADSIIFERLSKSGKEYLGATSKHLNVYGEAGLRTLALGYRKLDETEYAAWNSEFHKAKTSVGADRDEMLEKVSD 720 
WD40-rpts      ______________________________________________________WD 1______________________

Query      721 MMEKELILVGATAVEDKLQKGVPQCIDNLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKQISISLTNVEESSQNSEA 800 
WD40-rpts      _____________________________________)                                          

Query      801 AAKESILMQITNASQMIKIEKDPHAAFALIIDGKTLTYALKDDVKYQFLALAVDCASVICCRVSPKQKALVTRLAKEGTG 880 
WD40-rpts                                                                                      

Query      881 KTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNITFGLTL 960 
WD40-rpts                                                                                      

Query      961 FYFECFTGFSGQSIYNDSYLLLFNVVLTSLPVISLGVFEQDVPSDVCLQFPALYQQGPKNLFFDWYRILGWMGNGVYASI 1040
WD40-rpts                                                                                      

Query     1041 VIFTLNLGIFHVQSFRSDGQTADMNAMGTAMFTCIIWAVNVQIALTMSHFTWIQHVMIWGSIGAWYVFLALYGMLPVKLS 1120
WD40-rpts                                                                                      

Query     1121 GNIFHMLVEILAPAPIFWLTSLLVIAATTLPYLFHISYQRSVNPLDHHIIQEIKHFRIDVEDERMWKREKSKAREKTKIG 1200
WD40-rpts                                                                                      

Query     1201 FTARVDAKIRQLRGRLQRKHSVLSVMSGTSSNDTPSSNSQ 1240
WD40-rpts                                              

1 WD40-repeats found in QUERY=AT1G54280.1 (Len=1240):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   635-758      3.31  251.58  0.02506       20.0%     31.99

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  635-758    DEEGQILLLCKGADSIIFERLSKSGKEYLGATSKHLNVYGEAGLRTLALGYRKLDETEYAAWNSEFHKAKTSVGADRDEMLEKVSDMMEKELILVGATAVEDKLQKGVPQCIDNLAQAGLKIWV

   WD40 Template    TGECLRTLSGHTS------------------------------------GVTSVS-----------------FSPD-------------GKRLVSGS-------EDG-----------TIKVWD