Input parameters:

  Query = AT1G53620.1 (Len=101)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G53620.1, Len=101):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPVVNVIIILGACVIFVLTVICCISHRKKEPLFQPRDLENGLAGIKDGGLVVLTGTAVVAAGVTTERSGGCGGGGDGGG 80  
WD40-rpts      (_________________________WD 1________________________)                         

Query       81 CDGDAGGGDGGGCGGCGGCGG 101 
WD40-rpts                           

1 WD40-repeats found in QUERY=AT1G53620.1 (Len=101):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-55       2.94  235.94  0.04040       12.5%     14.47

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-55     MEPVVNVIIILGACVIFVLTVICCISHRKKEPLFQPRDLENGLAGIKDGGLVVLT

   WD40 Template    TGECLRTLSGH---------------TSGVTSVSFSPDGKRLVSGSEDGTIKVWD