Input parameters:

  Query = AT1G52360.2 (Len=970)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G52360.2, Len=970):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFLFDLSNLIRIFACRWREFECSLMTFFCVELSNDHGCCILRRSEPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYS 80  
WD40-rpts        (_________________WD 1_________________)         (_______________WD 2_________

Query       81 GTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLS 160 
WD40-rpts      ______)   (_________________WD 3________________)   (_________________WD 4______

Query      161 SSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTG 240 
WD40-rpts      __________)(___________________WD 5___________________)(___________________WD 6_

Query      241 GDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWA 320 
WD40-rpts      __________________)   (_________________WD 7________________)   (_______________

Query      321 IGYIKSSRRVVIGYDEGTIMVKLGREIPVASMDNTGKIIWAKHNEIQTANIKSIGADYEVTDGERLPLSVKELGTCDLYP 400 
WD40-rpts      __WD 8________________)(__________________WD 9_________________)  (_____________

Query      401 QSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSEGECAVRESSSKIKIFSKNFQEKRSIRPTFSAEKIFG 480 
WD40-rpts      ____WD10________________)                                                       

Query      481 GTLLAMCSSDFICFYDWAECRLIQRIDVTVKNLYWADSGDLVAIASDTSFYILKFNRDLVTSHFDSGRPTEEEGVEDAFE 560 
WD40-rpts                      (_________________WD11________________)                         

Query      561 VLHENDERVRTGIWVGDCFIYNNSSWKLNYCVGGEVTTMYHLDRPMYLLGYLASQSRVFLVDKEFNVIGYTLLLSLIEYK 640 
WD40-rpts                                                                                      

Query      641 TLVMRGDLDKASEILPTIPKDQHNSVAHFLESRGMIEDALEIATDPDYRFELAIQLGRLEIAQEIAVEVQSESKWKQLGE 720 
WD40-rpts                                                                                      

Query      721 LAMSSGKLQMAEECMKYAMDLSGLLLLYSSLGDAEGVTKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAA 800 
WD40-rpts                                                                                      

Query      801 LMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYSNLFEDWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTL 880 
WD40-rpts                                                                                      

Query      881 VEAFRNLQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHVEEHHEEKEAEEEEGIVDGDSTDGAVLVNGSEADEEW 960 
WD40-rpts                                                                                      

Query      961 GTNNEGNPSA 970 
WD40-rpts                

11 WD40-repeats found in QUERY=AT1G52360.2 (Len=970):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-42       4.09  283.44  0.00939       10.0%     38.80
  WD 2:  Seg  5    52-87       5.73  351.38  0.00114       22.5%     47.39
  WD 3:  Seg  8    91-129      6.77  394.27  0.00030       20.0%     56.58
  WD 4:  Seg 12   133-171      8.04  446.98  5.9e-05       25.0%     57.02
  WD 5:  Seg 16   172-215      7.82  437.52  7.9e-05       37.5%     52.44
  WD 6:  Seg 20   216-259      7.82  437.50  7.9e-05       42.5%     50.15
  WD 7:  Seg 24   263-301      9.92  524.31  5.3e-06       42.5%     54.19
  WD 8:  Seg 28   305-343      5.36  336.06  0.00184       25.0%     53.54
  WD 9:  Seg 32   344-384      3.27  249.69  0.02655        7.5%     28.47
  WD10:  Seg 36   387-425      3.76  269.87  0.01428       15.0%     45.04
  WD11:  Seg 47   497-535      3.29  250.42  0.02596       15.0%     42.08

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-42     LF--D---L-SNLIRIFACRWREFECSL-MTFF--CVELSNDHGCCILR
   WD 2   52-87     ----------KRKLAQRSERVKSVDLHP-TEPW--ILASLYSGTLCIWN
   WD 3   91-129    -Q--V---M-AKSFEVTELPVRSAKFVA-RKQW--VVAGADDMYIRVYN
   WD 4  133-171    -M--D---K-VKVFEAHSDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 5  172-215    WE--KGWAC-TQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN
   WD 6  216-259    LGSPD---P-NFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 7  263-301    -K--S---C-VQTLEGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
   WD 8  305-343    -Y--R---L-ENTLNYGLERVWAIGYIK-SSRR--VVIGYDEGTIMVKL
   WD 9  344-384    GR--E---IPVASMDNTGKIIWAKHNEI-QTAN--IKSIGADYEVTDGE
   WD10  387-425    -P--L---S-VKELGTCDLYPQSLKHNP-NGRF--VVVCGDGEYIIYTA
   WD11  497-535    WA--E---C--RLIQRIDVTVKNLYWAD-SGDL--VAIASDTSFYILKF

   WD40 Template    TG--E---C-LRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD