Input parameters:

  Query = AT1G52360.1 (Len=926)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G52360.1, Len=926):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMY 80  
WD40-rpts         (_________________WD 1_________________)   (_________________WD 2____________

Query       81 IRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFAS 160 
WD40-rpts      ____)   (_________________WD 3________________)(___________________WD 4_________

Query      161 ASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE 240 
WD40-rpts      __________)(___________________WD 5___________________)   (_________________WD 6

Query      241 LPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMVKLGREIPVASMDNTGKIIWAKHN 320 
WD40-rpts      ________________)   (_________________WD 7________________)(__________________WD

Query      321 EIQTANIKSIGADYEVTDGERLPLSVKELGTCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSGLEFVWSSE 400 
WD40-rpts       8_________________)  (_________________WD 9________________)                   

Query      401 GECAVRESSSKIKIFSKNFQEKRSIRPTFSAEKIFGGTLLAMCSSDFICFYDWAECRLIQRIDVTVKNLYWADSGDLVAI 480 
WD40-rpts                                                          (_________________WD10______

Query      481 ASDTSFYILKFNRDLVTSHFDSGRPTEEEGVEDAFEVLHENDERVRTGIWVGDCFIYNNSSWKLNYCVGGEVTTMYHLDR 560 
WD40-rpts      __________)(_________________WD11_________________)                             

Query      561 PMYLLGYLASQSRVFLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDKASEILPTIPKDQHNSVAHFLESRGMIEDALEIAT 640 
WD40-rpts                                                                                      

Query      641 DPDYRFELAIQLGRLEIAQEIAVEVQSESKWKQLGELAMSSGKLQMAEECMKYAMDLSGLLLLYSSLGDAEGVTKLATLA 720 
WD40-rpts                                                                                      

Query      721 KEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYSNLFE 800 
WD40-rpts                                                                                      

Query      801 DWQVALSVEAKAVETRGVYTGAKDYPSHADKSSMTLVEAFRNLQVEEEESLENGDMDHEEVVAEENGNEQRNEDDVAEHV 880 
WD40-rpts                                                                                      

Query      881 EEHHEEKEAEEEEGIVDGDSTDGAVLVNGSEADEEWGTNNEGNPSA 926 
WD40-rpts                                                    

11 WD40-repeats found in QUERY=AT1G52360.1 (Len=926):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43       6.32  375.59  0.00054       25.0%     53.81
  WD 2:  Seg  5    47-85       6.70  391.28  0.00033       20.0%     56.60
  WD 3:  Seg  9    89-127      8.06  447.52  5.8e-05       25.0%     56.33
  WD 4:  Seg 13   128-171      7.76  435.38  8.4e-05       37.5%     56.34
  WD 5:  Seg 17   172-215      7.88  440.36  7.2e-05       42.5%     50.60
  WD 6:  Seg 21   219-257      9.98  526.93  4.9e-06       42.5%     55.89
  WD 7:  Seg 25   261-299      5.56  344.33  0.00142       25.0%     55.64
  WD 8:  Seg 29   300-340      3.59  262.75  0.01778        7.5%     32.54
  WD 9:  Seg 33   343-381      3.93  276.83  0.01152       15.0%     43.77
  WD10:  Seg 44   453-491      3.59  262.93  0.01768       15.0%     42.44
  WD11:  Seg 48   492-531      3.66  265.83  0.01617        7.5%     15.86

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     RL--E---I-KRKLAQRSERVKSVDLHP-TEPW--ILASLYSGTLCIWN
   WD 2   47-85     -Q--V---M-AKSFEVTELPVRSAKFVA-RKQW--VVAGADDMYIRVYN
   WD 3   89-127    -M--D---K-VKVFEAHSDYIRCVAVHP-TLPY--VLSSSDDMLIKLWD
   WD 4  128-171    WE--KGWAC-TQIFEGHSHYVMQVTFNPKDTNT--FASASLDRTIKIWN
   WD 5  172-215    LGSPD---P-NFTLDAHQKGVNCVDYFT-GGDKPYLITGSDDHTAKVWD
   WD 6  219-257    -K--S---C-VQTLEGHTHNVSAVCFHP-ELPI--IITGSEDGTVRIWH
   WD 7  261-299    -Y--R---L-ENTLNYGLERVWAIGYIK-SSRR--VVIGYDEGTIMVKL
   WD 8  300-340    GR--E---IPVASMDNTGKIIWAKHNEI-QTAN--IKSIGADYEVTDGE
   WD 9  343-381    -P--L---S-VKELGTCDLYPQSLKHNP-NGRF--VVVCGDGEYIIYTA
   WD10  453-491    WA--E---C--RLIQRIDVTVKNLYWAD-SGDL--VAIASDTSFYILKF
   WD11  492-531    NR--D---L-VTSHFDSGRPTEEEGVED-AFEV--LHENDERVRTGIWV

   WD40 Template    TG--E---C-LRTLSGHTSGVTSVSFSP-DGKR--LVSGSEDGTIKVWD