Input parameters:

  Query = AT1G51690.3 (Len=603)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G51690.3, Len=603):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNQNIEEIKFILLIVCLLVPSAATLLGVSKRIFQETALQLNCYQWMDNNAKNLCFVFSFNAQESKKTELSYPKERSVCES 80  
WD40-rpts                                                                 (____________________

Query       81 ERARDREREREMNGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTD 160 
WD40-rpts      ____WD 1_______________________)     (_________________WD 2_________________)   

Query      161 TNNSSGTRRELEEADYPLRHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQDKK 240 
WD40-rpts                                    (____________________WD 3___________________)     

Query      241 IKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGVSEVNNSLCNDFSLPAGGISSLRLPVVTSHESSPVARCRRVYA 320 
WD40-rpts                                  (_______________WD 4______________)(________________

Query      321 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIRL 400 
WD40-rpts      _____WD 5_____________________)            (_________________WD 6_______________

Query      401 IDLRQSALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDAGPVATFQVHEYLKPKL 480 
WD40-rpts      _)                   (________________WD 7________________)            (________

Query      481 CDLYENDSIFDKFECCISGNGLRAATGSYSNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRALSSITRVVSRGS 560 
WD40-rpts      ____________WD 8____________________)    (_________________WD 9________________)

Query      561 ESPGVDGNTNALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 603 
WD40-rpts                                                 

9 WD40-repeats found in QUERY=AT1G51690.3 (Len=603):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    60-112      2.79  230.05  0.04831       15.0%     19.49
  WD 2:  Seg  4   118-157      9.01  486.66  1.7e-05       12.5%     40.15
  WD 3:  Seg  8   191-235      5.00  321.13  0.00292       15.0%     44.43
  WD 4:  Seg 14   269-303      5.28  332.74  0.00204       17.5%     29.71
  WD 5:  Seg 17   304-351      5.95  360.56  0.00086       22.5%     52.68
  WD 6:  Seg 22   364-402      6.33  376.29  0.00053       22.5%     44.86
  WD 7:  Seg 25   422-459      5.60  345.80  0.00136       22.5%     36.82
  WD 8:  Seg 29   472-517      6.29  374.34  0.00056       20.0%     41.14
  WD 9:  Seg 32   522-560      6.17  369.49  0.00065       10.0%     31.83

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   60-112    NAQ---------E---SKK------TELSYPKERSVCESERARDRERERE--MNGG-DEVVAASADPSLPLEWR
   WD 2  118-157    GER---------S---AGE------E------------VQEVDIISAIEF--DNSG-NHLATGDRGGRVVL-FE
   WD 3  191-235    SHD---------PEFDYLK------S------------LEIEEKINKIRWCQTANG-ALFLLSTNDKTIKF-WK
   WD 4  269-303    TNS---------C---L-----------------------VNGGVSEVNN--SLCN-DFSLPAGGISSLRL-PV
   WD 5  304-351    VTSHESSPVARCR---RVY------A------------HAHDYHINSISN--NSDG-ETFISAD-DLRINL-WN
   WD 6  364-402    VKP--------------AK------M------------EDLSEVITSAEF--HPTHCNMLAYSSSKGSIRL-ID
   WD 7  422-459    -AG---------P---KSF------F------------TEIIASVSDIKF--AKEG-RYLLSRD-YMTLKL-WD
   WD 8  472-517    VHE---------Y---LKPKLCDLYE------------NDSIFDKFECCI--SGNG-LRAATGSYSNLFRV-FG
   WD 9  522-560    -ST---------E---TAT------L------------EASRNPMRRHVP--IPSR-PSRALSSITRVVSR-GS

   WD40 Template    TGE---------C---LRT------L------------SGHTSGVTSVSF--SPDG-KRLVSGSEDGTIKV-WD