Input parameters:

  Query = AT1G50510.1 (Len=330)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G50510.1, Len=330):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSLAQSRISNLQNHLSPLEANNKLRSLVKISPQVSEALSNGRAVVALESTIISHGMPYPQNLQTAKEVESIVRENGAI 80  
WD40-rpts                                                                                      

Query       81 PATIAILNGVPCIGLSEEELERLASLGKSVQKTAGRDIANVVATRGNGATTVSATLFFASMVGIQVFVTGGIGGVHRHAN 160 
WD40-rpts                                                                   (__________________

Query      161 HSMDISSDLTALGRTPIAVISAGVKSILDIPKTLEYLETQEVYVAAYKSDEFPAFFTEKSGCKAPSRVNSPEDCARVIDA 240 
WD40-rpts      ___WD 1_____________________)                                                   

Query      241 NMKLNRQAGILFAIPIPKHHSAAGNLIESATQRALTEAREQNVTGNAETPFLLARVNELTGGTSLAANIALVKNNALIGS 320 
WD40-rpts                                                                                      

Query      321 QIAVALSQLM 330 
WD40-rpts                

1 WD40-repeats found in QUERY=AT1G50510.1 (Len=330):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   142-189      3.12  243.54  0.03205       22.5%     15.83

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  142-189    VGIQVFVTGGIGGVHRHANHSMDISSDLTALGRTPIAVISAGVKSILD

   WD40 Template    TGECLRTLSG----HTSGVTSVSFSPD----GKRLVSGSEDGTIKVWD