Input parameters:

  Query = AT1G49040.1 (Len=1187)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G49040.1, Len=1187):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRIFEYFVVCGLGPEMRTVDGDLGFHGMQTFYLPALLDQFPPTDQSPYPAPPPQLPTCVLPAGVEFHSSGFVSSDPASF 80  
WD40-rpts                                                                                      

Query       81 PRSYPIVLTEGDGSKIFVSCIAFRDRVCEDIIEAYRLPPNTYADKCICLVSHAPNFRVLRNSLEEIFVLCFSSEGSCKPL 160 
WD40-rpts                                                                                      

Query      161 WDIIAYMVSNVPLPTPGKDRVLFAVENCLLSVEAPPEDSLPQADISLQPLVQCLDVDNLIKLFTSVLVERRILIRSNKYS 240 
WD40-rpts                                                                                      

Query      241 LLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSEEIPQIPEP 320 
WD40-rpts                                                                                      

Query      321 EFSTLRNDILKLLHPNVVAIDQLKGFGNSVEQCPKSLSKPWGEDHDLQLRVIFLKCFASILGGYRNFIENKVFSTDAFLK 400 
WD40-rpts                                                                                      

Query      401 RRSRSTNQPPEPMLVQFLGSFAFLDYLERRLSSDEKSTNLLEKLQDAVGRGQDAMSILPKSSMEPEIITIAEPEVEESAT 480 
WD40-rpts                                                                                      

Query      481 RYTYDRFPASVRSEEQEEKRKQILAAASGALESNGRHPPSSPPGKNTKEDNFSSMERAAERERMVLDIQVKLQGLWLRLL 560 
WD40-rpts                                                                                      

Query      561 KLGSDEDPLSSFEYGTILALIESDAEGIGGSGFIECIREHLYSGWHGQLSEEQFIAVKELLKMAVGRAASRSDLSTVRDA 640 
WD40-rpts                                                                                      

Query      641 LEVSAEMFKKDANNVSDYVQRHLISIPIWEELRFWEGYFEYLMEQPANESVNYATLVTARLIIVASHMAGLGLPDTEAWN 720 
WD40-rpts                                                                                      

Query      721 MIETIAEKQKLGYKLLIKLRGFLSHVQQLRVGYWGASSFKQQAISAGLPSPRPKDVSVSDETQQPSEASGRSWVQSMFSR 800 
WD40-rpts                                                   (_____________________________WD 1_

Query      801 DTASRANSFSRVRKWVSDNASSDITAAAQKKIQTNVRVLKGHGGAVTALHSVTRREVCDLVGDREDAGFFISGSTDCLVK 880 
WD40-rpts      ____________________________)         (____________________WD 2_________________

Query      881 IWDPSLRGSELRATLKGHTGTVRAISSDRGKIVSGSDDLSVIVWDKQTTQLLEELKGHDSQVSCVKMLSGERVLTAAHDG 960 
WD40-rpts      __)     (________________WD 3_______________)   (________________WD 4___________

Query      961 TVKMWDVRTDMCVATVGRCSSAILSLEYDDSTGILAAAGRDTVANIWDIRSGKQMHKLKGHTKWIRSIRMVEDTLITGSD 1040
WD40-rpts      _____)   (_________________WD 5________________)   (________________WD 6________

Query     1041 DWTARVWSVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLLRFWENDEGGIKCVKNITLHSSSILSINAGENWLG 1120
WD40-rpts      _______)   (_________________WD 7________________)(__________________WD 8_______

Query     1121 IGAADNSMSLFHRPSNAGTKVSGWQLYRVPQRTAAVVRCVASDLERKRICSGGRNGVLRLWDATINI 1187
WD40-rpts      ___________)           (_________________WD 9________________)     

9 WD40-repeats found in QUERY=AT1G49040.1 (Len=1187):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 16   766-829      5.86  356.59  0.00097       12.5%     38.78
  WD 2:  Seg 20   839-883      6.31  375.48  0.00054       35.0%     34.82
  WD 3:  Seg 24   889-925      8.04  446.90  5.9e-05       42.5%     49.73
  WD 4:  Seg 28   929-966      8.59  469.37  2.9e-05       37.5%     53.82
  WD 5:  Seg 32   970-1008     8.92  483.00  1.9e-05       20.0%     55.93
  WD 6:  Seg 36  1012-1048     8.41  461.93  3.7e-05       35.0%     45.35
  WD 7:  Seg 40  1052-1090    10.17  534.95  3.8e-06       37.5%     46.95
  WD 8:  Seg 43  1091-1132     6.56  385.84  0.00039       20.0%     47.68
  WD 9:  Seg 46  1144-1182     7.76  435.14  8.5e-05       25.0%     45.53

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  766-829    AGLPSPRPKDVSVSDETQQPSEASGRS----WVQSMFSRDTASRA------------NSFSRVRKWVSDNASSDITAAAQ
   WD 2  839-883    -----------------------------------LKGHGGAVTALHSVTRREVCDLVGDREDAGFFISGSTDCLVKIWD
   WD 3  889-925    -S------------------------E----LRATLKGHTGTVRA--------------ISSDRGKIVSGSDDLSVIVWD
   WD 4  929-966    -T------------------------Q----LLEELKGHDSQVSC------------VKML-SGERVLTAAHDGTVKMWD
   WD 5  970-1008   -D------------------------M----CVATVGRCSSAILS------------LEYDDSTGILAAAGRDTVANIWD
   WD 6 1012-1048   -G------------------------K----QMHKLKGHTKWIRS------------IRMVEDT--LITGSDDWTARVWS
   WD 7 1052-1090   -G------------------------S----CDAVLACHAGPVQS------------VEYSPFDKGIITGSADGLLRFWE
   WD 8 1091-1132   ND------------------------EGGIKCVKNITLHSSSILS------------INAGENW--LGIGAADNSMSLFH
   WD 9 1144-1182   -W------------------------Q----LYRVPQRTAAVVRC------------VASDLERKRICSGGRNGVLRLWD

   WD40 Template    TG------------------------E----CLRTLSGHTSGVTS------------VSFSPDGKRLVSGSEDGTIKVWD