Input parameters:

  Query = AT1G45110.1 (Len=343)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G45110.1, Len=343):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARVCLPCSFLRTSTLSILFRSPILSTTAAISFCSSSEFADSVAKDDSKRGPLKPGLYLVGTPIGNLEDITLRAIRVLRS 80  
WD40-rpts                                                                                      

Query       81 ADVILSEDTRHSGKLLQYYNIKAQLLSYHKFNEAQREQAVLTRLKQGEIVALISDAGTPGISDPGTQLAKMCAKENIDVI 160 
WD40-rpts      (_____________________________WD 1____________________________)           (_____

Query      161 PIPGACAVVAALSASGLETDEFTFVGFLPKHSGTRKERLIVSSNETRTQIFYVPPHKLSQFLEETTPYFGESRQCVIARE 240 
WD40-rpts      ______________________WD 2__________________________)                           

Query      241 ITKLHEEFWRGSIAEAKQEFLIRQPKGEITLLIEGKEETKAENPTESQLEEELRGLISDGHSLSTAVKTVAERTSMRKKE 320 
WD40-rpts                                                                                      

Query      321 VYSLALKKFGKQIRVEEEDEADE 343 
WD40-rpts                             

2 WD40-repeats found in QUERY=AT1G45110.1 (Len=343):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    81-143      3.08  242.05  0.03354       17.5%     17.88
  WD 2:  Seg  5   155-213      2.79  229.91  0.04851       17.5%      0.72

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   81-143    ADVILSEDTRHSGKLLQYYNIK--------AQLLSYHKFNEAQREQAVLTRLKQGEIVALI-----------SDAGTPGISD
   WD 2  155-213    ENIDVIPIP----------GACAVVAALSASGLETDEFTF-------------VGFLPKHSGTRKERLIVSSNETRTQIFYV

   WD40 Template    TGECLRTLS----------GHT--------SGVTSVSFSP-------------DGKRLVSG-----------SEDGTIKVWD