Input parameters:

  Query = AT1G43860.1 (Len=370)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G43860.1, Len=370):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLMKSFGSD 80  
WD40-rpts                              (_______________________________________________WD 1____

Query       81 DHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQKTINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVI 160 
WD40-rpts      __________________________________________)                                     

Query      161 RELQKHFPIKRSPMRLRLTVPVQNFPSLLEKLKEWDGSVVSKDESGTQMSTVCEMEPGLFRECDSHVRSIQGRLEILAVS 240 
WD40-rpts                                                                                      

Query      241 VHAEGDTSMDHYDEHDDMALQTHKPLLPAETETKDLTDPVVELSKKLQKQEISTTDNIKQEGGEEKKGTKCSTCNTFVGE 320 
WD40-rpts                                                                                      

Query      321 AKQYREHCKSDWHKHNLKRKTRKLPPISADECMSEIDMDDSRADLKDYSF 370 
WD40-rpts                                                        

1 WD40-repeats found in QUERY=AT1G43860.1 (Len=370):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    25-123      3.00  238.68  0.03717       20.0%     12.99

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-123    QGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQKTIN

   WD40 Template    TGECLRTLSGH-----------TS-----GVTSVSFSPDGKRLVS--------GSED-----------GTIKVW------------------------D