Input parameters:

  Query = AT1G32190.2 (Len=337)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G32190.2, Len=337):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEMLQIWDNSSISLFNSKSISESISWGMIIQAMELLLPSEYDTYADIEAAYECLQTDYGVGQEDLILYGQSVGSGPTLHL 80  
WD40-rpts                                                                                      

Query       81 ASKLPRLRGVVLHSGILSGLRVLCHVKFKFCCDIYSNVNKIKKVKCPVLVIHGTEDDVVNWLHGNRLWKMAKEPYEPLWI 160 
WD40-rpts        (____________________________________WD 1____________________________________)

Query      161 KGGGHCNLEIYPDYIRHLYRFIQDMENTTTKSRLKTIWQEIRRRDESTGCCCSGLCRPSCSCPKPRCPKPSCSCGCGCGD 240 
WD40-rpts                                                                                      

Query      241 CGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCSGCFSWLCCCGGGR 320 
WD40-rpts                                                                                      

Query      321 RKEGERRGSTTLEKSEG 337 
WD40-rpts                       

1 WD40-repeats found in QUERY=AT1G32190.2 (Len=337):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    83-160      2.91  234.67  0.04199       17.5%     15.18

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   83-160    KLPRLRGVVLHSGILSGLRVLCHVKFKFCCDIYSNVNKIKKVKCPVLVIHGTEDDVVNWLHGNRLWKMAKEPYEPLWI

   WD40 Template    TGECLRTLSGHTSGVT------------SVSFSPD---------GKRLVSGSEDGTIK-----------------VWD