Input parameters:

  Query = AT1G31230.1 (Len=911)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G31230.1, Len=911):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPVVSLAKVVTSPAVAGDLAVRVPFIYGKRLVSNRVSFGKLRRRSCIGQCVRSELQSPRVLGSVTDLALDNSVENGHLPK 80  
WD40-rpts                                                                                      

Query       81 GDSWAVHKFGGTCVGNSERIKDVAAVVVKDDSERKLVVVSAMSKVTDMMYDLIHRAESRDDSYLSALSGVLEKHRATAVD 160 
WD40-rpts                                                                                      

Query      161 LLDGDELSSFLARLNDDINNLKAMLRAIYIAGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTS 240 
WD40-rpts                                                                                      

Query      241 SNQVDPDFVESEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTDVDGVYSADPR 320 
WD40-rpts                                                                                      

Query      321 KVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNLSAPGTMICRQIDDEDGFKLDAPVKGFATID 400 
WD40-rpts                                                                                      

Query      401 NLALVNVEGTGMAGVPGTASAIFSAVKEVGANVIMISQASSEHSVCFAVPEKEVKAVSEALNSRFRQALAGGRLSQIEII 480 
WD40-rpts                                                                                      

Query      481 PNCSILAAVGQKMASTPGVSATFFNALAKANINIRAIAQGCSEFNITVVVKREDCIRALRAVHSRFYLSRTTLAVGIIGP 560 
WD40-rpts                                                                                      

Query      561 GLIGGTLLDQIRDQAAVLKEEFKIDLRVIGITGSSKMLMSESGIDLSRWRELMKEEGEKADMEKFTQYVKGNHFIPNSVM 640 
WD40-rpts                                                                                      

Query      641 VDCTADADIASCYYDWLLRGIHVVTPNKKANSGPLDQYLKIRDLQRKSYTHYFYEATVGAGLPIISTLRGLLETGDKILR 720 
WD40-rpts                                                                               (______

Query      721 IEGIFSGTLSYLFNNFVGTRSFSEVVAEAKQAGFTEPDPRDDLSGTDVARKVTILARESGLKLDLEGLPVQNLVPKPLQA 800 
WD40-rpts      ____________________________WD 1__________________________________)             

Query      801 CASAEEFMEKLPQFDEELSKQREEAEAAGEVLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGADNIIAFTTKRYKEQPL 880 
WD40-rpts                                                                                      

Query      881 IVRGPGAGAQVTAGGIFSDILRLAFYLGAPS 911 
WD40-rpts                                     

1 WD40-repeats found in QUERY=AT1G31230.1 (Len=911):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 27   714-787      3.70  267.66  0.01529       25.0%     -20.28

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  714-787    TGDKILRIEGIFSGTLSYLFNNFVGTRSFSEVVAEAKQAGFTEPDPRDDLSGTDVARKVTILARESGLKLDLEG

   WD40 Template    TGECLRTLSGHTSGV---------TSVS-------------FSPDGKRLVSGSE------------DGTIKVWD