Input parameters:

  Query = AT1G29840.1 (Len=263)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G29840.1, Len=263):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSSQGISATTQQKIVILNSNNEKLVGLLHETGSTEIVVLCHGFRSTKNDQVMKNVAAAIEKEGISAFRFDFSGNGESKG 80  
WD40-rpts                                                                                      

Query       81 SFYFGNYNYEADDLHSVIRYFTNMNRVVPIIIGHSKGGDVVLVYASKYQDIRNVINLSGRYDLKRGIGERLGEDYLERIK 160 
WD40-rpts                             (___________________________________________WD 1_________

Query      161 QQGFIDIKEGNAGFRVTEESLMERLNTDMHEACLKIDKECRVLTVHGSADEVIPLEDAKEFAKIIPNHKLEIVEGADHCY 240 
WD40-rpts      _________________________________)                                              

Query      241 TKHQSQLITNVMEFIKTVIVKNN 263 
WD40-rpts                             

1 WD40-repeats found in QUERY=AT1G29840.1 (Len=263):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   104-194      2.81  230.82  0.04719       17.5%      9.95

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  104-194    MNRVVPIIIGHSKGGDVVLVYASKYQDIRNVINLSGRYDLKRGIGERLGEDYLERIKQQGFIDIKEGNAGFRVTEESLMERLNTDMHEACL

   WD40 Template    TGECLRTLSGHT----------------SGVTSVSFSPD---------------------GKRLVSGSEDGTIK--------VWD------