Input parameters:

  Query = AT1G26330.2 (Len=1194)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G26330.2, Len=1194):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASPRVVSEDRKSVDIEIVSVGALYTGSWDKKYWSSSRVVNNTRSIETTYAYGYKAVRAHSGNTYYMEIEEGAKGPLFLI 80  
WD40-rpts                                                                                      

Query       81 RYLDESWTGQTPDIAWGKLQKTDFSHLKIWHGKRFTCKMGGMEFFGFKNPLVQRLLRELVTNSHGMVESSPSSRASHIRV 160 
WD40-rpts                                                                                      

Query      161 NDERPVMCANPNLLCYLDMPVARKKRSRKPGITYQNSVAKSVHKKPRFQDSLTGGEILNSAPVSICSGKGEVETVGQQVA 240 
WD40-rpts                                                                                      

Query      241 LPEQFHSNHATNEYSSLPSEKPPQMKIFIPIQETNRLPDSCKSKPLSKFSEEFHGLQEKENKPNDDNFLHESPNMTASSF 320 
WD40-rpts                                                                                      

Query      321 CAPDTLDFLQDNTASSAPKINDDTSCMKKEELTHANMVVGEGILAEPNAEDLADSTLNLTSKKSDSDLVDQETAKTMMSL 400 
WD40-rpts                                                                                      

Query      401 LLPQAIPLLKKTSSKKPPRNDMSDNCKTSQLNDASGTAVSLAIRESSGDDENMQVVAPDSDQDFASNVSIAPDSFDESHL 480 
WD40-rpts                                                                                      

Query      481 VGPGSGHIISSSQEVYPAVLPKMPIDEDHVPIVNDLSVSALEENNQEEYMKRFMSIPHCTSSVNMILSQESKERCAAEGN 560 
WD40-rpts                                                                                      

Query      561 LLQKEHHSENKEPKSTFCSTEGNGFPVDTTPTEACSVKKENHKVYIRKRVSTNQHRINRNLSSESKNSCRNTGEDDSIRN 640 
WD40-rpts                                                                                      

Query      641 MSPINSSRILELQPTLSTNSVSDRTNPLGNESGHVTEQYQGPELVKVNNNTFTNVKSNEACVVPQDTRSAHAFGSASISS 720 
WD40-rpts                                                                                      

Query      721 SSFPASKFEDCQANIGEELGIQVSEPPSTESQYKENTSEKCTSVQEFPASSNLKLNRDVKINNEMEKTVELLGCYFHPMP 800 
WD40-rpts                                                                                      

Query      801 VSSVLLRTVGNEIYILVLSFATEDRVRTLFMYKMSAEAPSKGFPSIIGHTPAILPIVDDKSSGNGTLEISNLHFTPDGLH 880 
WD40-rpts                                                       (____________________WD 1______

Query      881 LILTGNIKTPYCRKRETDCSCLICTSACFEENAVRIVQVKTGHVSLVTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWA 960 
WD40-rpts      _____________)                          (_________________WD 2_________________)

Query      961 MNSHWSGPTEEYVILANPCISSCIMELKKIPKCPHLVIGHNGIGEFTIWDISKRSLVSRFVSPSNLIFEFIPTSLFAWHP 1040
WD40-rpts                                                                                      

Query     1041 VHSHSTIEDNVDMILAATKLWFSKGVNNKTLVPAEVKDTAIWLLVSTDLDSDAKCDRVESPVRCWRLALLVKDQLILGSQ 1120
WD40-rpts                                                                                      

Query     1121 LDPRADVAGTISGHGVAGTLDGLVYMWDLSTGTKLGSLHDFKGQRVSCISTDDSRNICIASEDGQLLVYCHPEK 1194
WD40-rpts                                                                                

2 WD40-repeats found in QUERY=AT1G26330.2 (Len=1194):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 27   850-894      3.38  254.23  0.02310       25.0%     29.61
  WD 2:  Seg 31   921-960      3.47  258.14  0.02049       17.5%     45.28

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  850-894    TPAILPIVDDKSSGNGTLEISNLHFTPDGLHLILTGNIKTPYCRK
   WD 2  921-960    TGHVSLVTKLQADD-----SVQCVVVCDPNNLIAAVKSGNLIVWA

   WD40 Template    TGECLRTLSGHTSG-----VTSVSFSPDGKRLVSGSEDGTIKVWD