Input parameters:

  Query = AT1G26330.1 (Len=1189)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G26330.1, Len=1189):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASPRVVSEDRKSVDIEIVSVGALYTGSWDKKYWSSSRGKDRFPYPVGYKAVRAHSGNTYYMEIEEGAKGPLFLIRYLDE 80  
WD40-rpts                                                                                      

Query       81 SWTGQTPDIAWGKLQKTDFSHLKIWHGKRFTCKMGGMEFFGFKNPLVQRLLRELVTNSHGMVESSPSSRASHIRVNDERP 160 
WD40-rpts                                                                                      

Query      161 VMCANPNLLCYLDMPVARKKRSRKPGITYQNSVAKSVHKKPRFQDSLTGGEILNSAPVSICSGKGEVETVGQQVALPEQF 240 
WD40-rpts                                                                                      

Query      241 HSNHATNEYSSLPSEKPPQMKIFIPIQETNRLPDSCKSKPLSKFSEEFHGLQEKENKPNDDNFLHESPNMTASSFCAPDT 320 
WD40-rpts                                                                                      

Query      321 LDFLQDNTASSAPKINDDTSCMKKEELTHANMVVGEGILAEPNAEDLADSTLNLTSKKSDSDLVDQETAKTMMSLLLPQA 400 
WD40-rpts                                                                                      

Query      401 IPLLKKTSSKKPPRNDMSDNCKTSQLNDASGTAVSLAIRESSGDDENMQVVAPDSDQDFASNVSIAPDSFDESHLVGPGS 480 
WD40-rpts                                                                                      

Query      481 GHIISSSQEVYPAVLPKMPIDEDHVPIVNDLSVSALEENNQEEYMKRFMSIPHCTSSVNMILSQESKERCAAEGNLLQKE 560 
WD40-rpts                                                                                      

Query      561 HHSENKEPKSTFCSTEGNGFPVDTTPTEACSVKKENHKVYIRKRVSTNQHRINRNLSSESKNSCRNTGEDDSIRNMSPIN 640 
WD40-rpts                                                                                      

Query      641 SSRILELQPTLSTNSVSDRTNPLGNESGHVTEQYQGPELVKVNNNTFTNVKSNEACVVPQDTRSAHAFGSASISSSSFPA 720 
WD40-rpts                                                                                      

Query      721 SKFEDCQANIGEELGIQVSEPPSTESQYKENTSEKCTSVQEFPASSNLKLNRDVKINNEMEKTVELLGCYFHPMPVSSVL 800 
WD40-rpts                                                                                      

Query      801 LRTVGNEIYILVLSFATEDRVRTLFMYKMSAEAPSKGFPSIIGHTPAILPIVDDKSSGNGTLEISNLHFTPDGLHLILTG 880 
WD40-rpts                                                  (____________________WD 1___________

Query      881 NIKTPYCRKRETDCSCLICTSACFEENAVRIVQVKTGHVSLVTKLQADDSVQCVVVCDPNNLIAAVKSGNLIVWAMNSHW 960 
WD40-rpts      ________)                          (_________________WD 2_________________)     

Query      961 SGPTEEYVILANPCISSCIMELKKIPKCPHLVIGHNGIGEFTIWDISKRSLVSRFVSPSNLIFEFIPTSLFAWHPVHSHS 1040
WD40-rpts                                                                                      

Query     1041 TIEDNVDMILAATKLWFSKGVNNKTLVPAEVKDTAIWLLVSTDLDSDAKCDRVESPVRCWRLALLVKDQLILGSQLDPRA 1120
WD40-rpts                                                                                      

Query     1121 DVAGTISGHGVAGTLDGLVYMWDLSTGTKLGSLHDFKGQRVSCISTDDSRNICIASEDGQLLVYCHPEK 1189
WD40-rpts                                                                           

2 WD40-repeats found in QUERY=AT1G26330.1 (Len=1189):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 28   845-889      3.38  254.25  0.02309       25.0%     29.69
  WD 2:  Seg 32   916-955      3.47  258.13  0.02049       17.5%     45.16

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  845-889    TPAILPIVDDKSSGNGTLEISNLHFTPDGLHLILTGNIKTPYCRK
   WD 2  916-955    TGHVSLVTKLQADD-----SVQCVVVCDPNNLIAAVKSGNLIVWA

   WD40 Template    TGECLRTLSGHTSG-----VTSVSFSPDGKRLVSGSEDGTIKVWD