AASIA: A comprehensive protein structural interactome database for agricultural animals
Jiajun Li, Mengdi Yuan, Linyang Jiang, Dianke Li, Zhongtao Yin, Feng Zhu, Wenyu Shi, Zhuocheng Hou, Ziding Zhang*
Journal of Advanced Research, 2026.
Research Output
Publications
4 results found
* corresponding author · bold = first author
2026
DeepISO: deep learning-powered prediction of protein–protein interaction rewiring generated by alternative splicing
Xiaokun Guo, Linyang Jiang, Jiajun Li, Mengdi Yuan, Dianke Li, Wenyu Shi*, Ziding Zhang & Stefan Wuchty*
Genome Biology, 2026.
2025
PPEPFinder: A deep learning framework integrating sequence embeddings and structural graph representations for predicting fungal and oomycete effector proteins
Mengdi Yuan, Shaoke Zhang, Jiajun Li, Jingyan Zheng, Chenping Lei, Zhuojun Wang, Miao Zhao, Wenyu Shi*, Ziding Zhang*
The plant journal, 2025.
Graph neural network integrated with pretrained protein language model for predicting human–virus protein–protein interactions
Linyang Jiang, Xiaodi Yang, Xiaokun Guo, Dianke Li, Jiajun Li, Stefan Wuchty, Wenyu Shi*, Ziding Zhang*
Briefings in Bioinformatics, 2025.