Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G67260

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006223: uracil salvage0.00E+00
2GO:0097164: ammonium ion metabolic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:1901698: response to nitrogen compound0.00E+00
7GO:0006412: translation3.83E-07
8GO:0042254: ribosome biogenesis4.01E-06
9GO:0032544: plastid translation6.03E-06
10GO:0042372: phylloquinone biosynthetic process1.23E-04
11GO:0046520: sphingoid biosynthetic process2.32E-04
12GO:0070509: calcium ion import2.32E-04
13GO:0007263: nitric oxide mediated signal transduction2.32E-04
14GO:0006723: cuticle hydrocarbon biosynthetic process2.32E-04
15GO:0042371: vitamin K biosynthetic process2.32E-04
16GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway2.32E-04
17GO:0016126: sterol biosynthetic process3.89E-04
18GO:0030148: sphingolipid biosynthetic process4.97E-04
19GO:0009735: response to cytokinin5.09E-04
20GO:0060919: auxin influx5.15E-04
21GO:0070981: L-asparagine biosynthetic process5.15E-04
22GO:0006529: asparagine biosynthetic process5.15E-04
23GO:0080040: positive regulation of cellular response to phosphate starvation5.15E-04
24GO:0006633: fatty acid biosynthetic process7.19E-04
25GO:0043447: alkane biosynthetic process8.37E-04
26GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition8.37E-04
27GO:0015840: urea transport8.37E-04
28GO:0071705: nitrogen compound transport8.37E-04
29GO:0045493: xylan catabolic process8.37E-04
30GO:0006833: water transport9.01E-04
31GO:0006424: glutamyl-tRNA aminoacylation1.19E-03
32GO:0046739: transport of virus in multicellular host1.19E-03
33GO:2001141: regulation of RNA biosynthetic process1.19E-03
34GO:0080170: hydrogen peroxide transmembrane transport1.19E-03
35GO:0030104: water homeostasis1.59E-03
36GO:0044206: UMP salvage1.59E-03
37GO:0071249: cellular response to nitrate1.59E-03
38GO:0042335: cuticle development1.81E-03
39GO:0034220: ion transmembrane transport1.81E-03
40GO:0043097: pyrimidine nucleoside salvage2.03E-03
41GO:0032543: mitochondrial translation2.03E-03
42GO:0006564: L-serine biosynthetic process2.03E-03
43GO:0010236: plastoquinone biosynthetic process2.03E-03
44GO:0045038: protein import into chloroplast thylakoid membrane2.03E-03
45GO:0016123: xanthophyll biosynthetic process2.03E-03
46GO:0016132: brassinosteroid biosynthetic process2.40E-03
47GO:0006655: phosphatidylglycerol biosynthetic process2.50E-03
48GO:0006206: pyrimidine nucleobase metabolic process2.50E-03
49GO:0032973: amino acid export2.50E-03
50GO:0016554: cytidine to uridine editing2.50E-03
51GO:0010583: response to cyclopentenone2.56E-03
52GO:0032502: developmental process2.56E-03
53GO:1901259: chloroplast rRNA processing3.00E-03
54GO:0006694: steroid biosynthetic process3.00E-03
55GO:0009854: oxidative photosynthetic carbon pathway3.00E-03
56GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity3.00E-03
57GO:0009955: adaxial/abaxial pattern specification3.00E-03
58GO:0010027: thylakoid membrane organization3.46E-03
59GO:0010444: guard mother cell differentiation3.54E-03
60GO:0009772: photosynthetic electron transport in photosystem II3.54E-03
61GO:0043090: amino acid import3.54E-03
62GO:0006614: SRP-dependent cotranslational protein targeting to membrane3.54E-03
63GO:0015995: chlorophyll biosynthetic process4.07E-03
64GO:0010411: xyloglucan metabolic process4.07E-03
65GO:0009690: cytokinin metabolic process4.10E-03
66GO:0006605: protein targeting4.10E-03
67GO:0010078: maintenance of root meristem identity4.10E-03
68GO:0008610: lipid biosynthetic process4.10E-03
69GO:0010497: plasmodesmata-mediated intercellular transport4.70E-03
70GO:0043562: cellular response to nitrogen levels4.70E-03
71GO:0017004: cytochrome complex assembly4.70E-03
72GO:0009808: lignin metabolic process4.70E-03
73GO:0009932: cell tip growth4.70E-03
74GO:0071482: cellular response to light stimulus4.70E-03
75GO:0000160: phosphorelay signal transduction system4.73E-03
76GO:0009834: plant-type secondary cell wall biogenesis4.97E-03
77GO:0080144: amino acid homeostasis5.32E-03
78GO:0006783: heme biosynthetic process5.32E-03
79GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process5.97E-03
80GO:0006779: porphyrin-containing compound biosynthetic process5.97E-03
81GO:1900865: chloroplast RNA modification5.97E-03
82GO:0006782: protoporphyrinogen IX biosynthetic process6.65E-03
83GO:0006535: cysteine biosynthetic process from serine6.65E-03
84GO:0043069: negative regulation of programmed cell death6.65E-03
85GO:0048829: root cap development6.65E-03
86GO:0006631: fatty acid metabolic process6.78E-03
87GO:0009073: aromatic amino acid family biosynthetic process7.35E-03
88GO:0006415: translational termination7.35E-03
89GO:0006352: DNA-templated transcription, initiation7.35E-03
90GO:0009684: indoleacetic acid biosynthetic process7.35E-03
91GO:0000038: very long-chain fatty acid metabolic process7.35E-03
92GO:0009826: unidimensional cell growth7.63E-03
93GO:0042546: cell wall biogenesis7.65E-03
94GO:0008643: carbohydrate transport7.96E-03
95GO:0009658: chloroplast organization8.01E-03
96GO:0016024: CDP-diacylglycerol biosynthetic process8.08E-03
97GO:0015706: nitrate transport8.08E-03
98GO:0050826: response to freezing8.84E-03
99GO:0009725: response to hormone8.84E-03
100GO:0010588: cotyledon vascular tissue pattern formation8.84E-03
101GO:0010207: photosystem II assembly9.62E-03
102GO:0048467: gynoecium development9.62E-03
103GO:0006541: glutamine metabolic process9.62E-03
104GO:0009736: cytokinin-activated signaling pathway9.93E-03
105GO:0010167: response to nitrate1.04E-02
106GO:0055114: oxidation-reduction process1.06E-02
107GO:0010025: wax biosynthetic process1.13E-02
108GO:0019762: glucosinolate catabolic process1.13E-02
109GO:0019344: cysteine biosynthetic process1.21E-02
110GO:0009116: nucleoside metabolic process1.21E-02
111GO:0000027: ribosomal large subunit assembly1.21E-02
112GO:0009793: embryo development ending in seed dormancy1.27E-02
113GO:0003333: amino acid transmembrane transport1.39E-02
114GO:0019915: lipid storage1.39E-02
115GO:0061077: chaperone-mediated protein folding1.39E-02
116GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.57E-02
117GO:0006810: transport1.64E-02
118GO:0019722: calcium-mediated signaling1.67E-02
119GO:0009306: protein secretion1.67E-02
120GO:0070417: cellular response to cold1.77E-02
121GO:0042391: regulation of membrane potential1.87E-02
122GO:0080022: primary root development1.87E-02
123GO:0000413: protein peptidyl-prolyl isomerization1.87E-02
124GO:0010087: phloem or xylem histogenesis1.87E-02
125GO:0009958: positive gravitropism1.97E-02
126GO:0009646: response to absence of light2.07E-02
127GO:0048825: cotyledon development2.18E-02
128GO:0009851: auxin biosynthetic process2.18E-02
129GO:0016036: cellular response to phosphate starvation2.29E-02
130GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.29E-02
131GO:0071554: cell wall organization or biogenesis2.29E-02
132GO:0040008: regulation of growth2.34E-02
133GO:0048235: pollen sperm cell differentiation2.40E-02
134GO:1901657: glycosyl compound metabolic process2.51E-02
135GO:0009828: plant-type cell wall loosening2.62E-02
136GO:0009567: double fertilization forming a zygote and endosperm2.62E-02
137GO:0007267: cell-cell signaling2.74E-02
138GO:0071555: cell wall organization2.75E-02
139GO:0042128: nitrate assimilation3.22E-02
140GO:0016311: dephosphorylation3.47E-02
141GO:0010311: lateral root formation3.72E-02
142GO:0009813: flavonoid biosynthetic process3.72E-02
143GO:0009407: toxin catabolic process3.85E-02
144GO:0048527: lateral root development3.98E-02
145GO:0009860: pollen tube growth4.08E-02
146GO:0006865: amino acid transport4.12E-02
147GO:0007049: cell cycle4.23E-02
148GO:0009637: response to blue light4.25E-02
149GO:0009853: photorespiration4.25E-02
150GO:0006839: mitochondrial transport4.67E-02
151GO:0055085: transmembrane transport4.74E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0005048: signal sequence binding0.00E+00
6GO:0050614: delta24-sterol reductase activity0.00E+00
7GO:0005222: intracellular cAMP activated cation channel activity0.00E+00
8GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
9GO:0003735: structural constituent of ribosome4.36E-08
10GO:0005528: FK506 binding6.28E-05
11GO:0019843: rRNA binding6.39E-05
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.55E-04
13GO:0004655: porphobilinogen synthase activity2.32E-04
14GO:0004071: aspartate-ammonia ligase activity2.32E-04
15GO:0052631: sphingolipid delta-8 desaturase activity2.32E-04
16GO:0047560: 3-dehydrosphinganine reductase activity2.32E-04
17GO:0009374: biotin binding2.32E-04
18GO:0015200: methylammonium transmembrane transporter activity2.32E-04
19GO:0005221: intracellular cyclic nucleotide activated cation channel activity2.32E-04
20GO:0000248: C-5 sterol desaturase activity2.32E-04
21GO:0000170: sphingosine hydroxylase activity2.32E-04
22GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity2.32E-04
23GO:0030794: (S)-coclaurine-N-methyltransferase activity2.32E-04
24GO:0080132: fatty acid alpha-hydroxylase activity2.32E-04
25GO:0016491: oxidoreductase activity3.67E-04
26GO:0015250: water channel activity3.89E-04
27GO:0080097: L-tryptophan:pyruvate aminotransferase activity5.15E-04
28GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity5.15E-04
29GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity5.15E-04
30GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity5.15E-04
31GO:0004617: phosphoglycerate dehydrogenase activity5.15E-04
32GO:0042284: sphingolipid delta-4 desaturase activity5.15E-04
33GO:0005504: fatty acid binding8.37E-04
34GO:0004148: dihydrolipoyl dehydrogenase activity8.37E-04
35GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.19E-03
36GO:0016851: magnesium chelatase activity1.19E-03
37GO:0016149: translation release factor activity, codon specific1.19E-03
38GO:0031176: endo-1,4-beta-xylanase activity1.19E-03
39GO:0008097: 5S rRNA binding1.19E-03
40GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.19E-03
41GO:0004506: squalene monooxygenase activity1.59E-03
42GO:0045430: chalcone isomerase activity1.59E-03
43GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.59E-03
44GO:0015204: urea transmembrane transporter activity1.59E-03
45GO:0004659: prenyltransferase activity1.59E-03
46GO:0001053: plastid sigma factor activity1.59E-03
47GO:0004845: uracil phosphoribosyltransferase activity1.59E-03
48GO:0016836: hydro-lyase activity1.59E-03
49GO:0004045: aminoacyl-tRNA hydrolase activity1.59E-03
50GO:0016987: sigma factor activity1.59E-03
51GO:0010328: auxin influx transmembrane transporter activity1.59E-03
52GO:0004040: amidase activity2.03E-03
53GO:0003989: acetyl-CoA carboxylase activity2.03E-03
54GO:0016846: carbon-sulfur lyase activity2.03E-03
55GO:0016762: xyloglucan:xyloglucosyl transferase activity2.40E-03
56GO:0016208: AMP binding2.50E-03
57GO:0008200: ion channel inhibitor activity2.50E-03
58GO:0008519: ammonium transmembrane transporter activity2.50E-03
59GO:0000156: phosphorelay response regulator activity2.73E-03
60GO:0051753: mannan synthase activity3.00E-03
61GO:0004849: uridine kinase activity3.00E-03
62GO:0005261: cation channel activity3.00E-03
63GO:0005242: inward rectifier potassium channel activity3.00E-03
64GO:0004124: cysteine synthase activity3.00E-03
65GO:0051920: peroxiredoxin activity3.00E-03
66GO:0016597: amino acid binding3.26E-03
67GO:0043295: glutathione binding3.54E-03
68GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.99E-03
69GO:0016798: hydrolase activity, acting on glycosyl bonds4.07E-03
70GO:0102483: scopolin beta-glucosidase activity4.07E-03
71GO:0004033: aldo-keto reductase (NADP) activity4.10E-03
72GO:0016209: antioxidant activity4.10E-03
73GO:0008312: 7S RNA binding4.10E-03
74GO:0003747: translation release factor activity5.32E-03
75GO:0008422: beta-glucosidase activity6.23E-03
76GO:0008794: arsenate reductase (glutaredoxin) activity7.35E-03
77GO:0015293: symporter activity8.27E-03
78GO:0005262: calcium channel activity8.84E-03
79GO:0051119: sugar transmembrane transporter activity1.04E-02
80GO:0030552: cAMP binding1.04E-02
81GO:0030553: cGMP binding1.04E-02
82GO:0015171: amino acid transmembrane transporter activity1.10E-02
83GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.13E-02
84GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.13E-02
85GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.13E-02
86GO:0004650: polygalacturonase activity1.29E-02
87GO:0005216: ion channel activity1.30E-02
88GO:0030570: pectate lyase activity1.57E-02
89GO:0008514: organic anion transmembrane transporter activity1.67E-02
90GO:0030551: cyclic nucleotide binding1.87E-02
91GO:0010181: FMN binding2.07E-02
92GO:0019901: protein kinase binding2.18E-02
93GO:0008289: lipid binding2.62E-02
94GO:0005506: iron ion binding2.69E-02
95GO:0016722: oxidoreductase activity, oxidizing metal ions2.74E-02
96GO:0016413: O-acetyltransferase activity2.86E-02
97GO:0003824: catalytic activity3.16E-02
98GO:0005215: transporter activity3.19E-02
99GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.59E-02
100GO:0004601: peroxidase activity3.79E-02
101GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.85E-02
102GO:0016788: hydrolase activity, acting on ester bonds3.86E-02
103GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.98E-02
104GO:0050660: flavin adenine dinucleotide binding4.38E-02
105GO:0003993: acid phosphatase activity4.39E-02
106GO:0016740: transferase activity4.52E-02
107GO:0004364: glutathione transferase activity4.95E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009570: chloroplast stroma2.65E-20
4GO:0009507: chloroplast2.07E-16
5GO:0009941: chloroplast envelope9.63E-14
6GO:0005840: ribosome8.02E-07
7GO:0031225: anchored component of membrane1.67E-06
8GO:0046658: anchored component of plasma membrane2.73E-05
9GO:0009543: chloroplast thylakoid lumen6.39E-05
10GO:0031977: thylakoid lumen1.02E-04
11GO:0042807: central vacuole1.62E-04
12GO:0009534: chloroplast thylakoid2.10E-04
13GO:0043674: columella2.32E-04
14GO:0016020: membrane3.00E-04
15GO:0009535: chloroplast thylakoid membrane4.24E-04
16GO:0080085: signal recognition particle, chloroplast targeting5.15E-04
17GO:0048046: apoplast5.23E-04
18GO:0005576: extracellular region5.37E-04
19GO:0005618: cell wall6.68E-04
20GO:0009509: chromoplast8.37E-04
21GO:0009317: acetyl-CoA carboxylase complex8.37E-04
22GO:0010007: magnesium chelatase complex8.37E-04
23GO:0009579: thylakoid8.71E-04
24GO:0005887: integral component of plasma membrane1.53E-03
25GO:0005789: endoplasmic reticulum membrane1.76E-03
26GO:0009533: chloroplast stromal thylakoid3.54E-03
27GO:0009536: plastid3.68E-03
28GO:0016021: integral component of membrane4.51E-03
29GO:0005786: signal recognition particle, endoplasmic reticulum targeting4.70E-03
30GO:0000326: protein storage vacuole4.70E-03
31GO:0005763: mitochondrial small ribosomal subunit5.32E-03
32GO:0005886: plasma membrane5.84E-03
33GO:0000311: plastid large ribosomal subunit8.08E-03
34GO:0030176: integral component of endoplasmic reticulum membrane1.04E-02
35GO:0005774: vacuolar membrane1.04E-02
36GO:0031969: chloroplast membrane1.05E-02
37GO:0022625: cytosolic large ribosomal subunit1.12E-02
38GO:0009505: plant-type cell wall1.25E-02
39GO:0015935: small ribosomal subunit1.39E-02
40GO:0009705: plant-type vacuole membrane2.46E-02
41GO:0009295: nucleoid2.74E-02
42GO:0005778: peroxisomal membrane2.74E-02
43GO:0030529: intracellular ribonucleoprotein complex2.98E-02
44GO:0022626: cytosolic ribosome3.35E-02
45GO:0000151: ubiquitin ligase complex3.59E-02
46GO:0009506: plasmodesma3.70E-02
47GO:0015934: large ribosomal subunit3.98E-02
48GO:0005783: endoplasmic reticulum4.37E-02
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Gene type



Gene DE type